33 items (Rhinopithecus roxellana) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	SAP30	Sin3A associated protein 30. (124 aa)
	MTA1	Metastasis associated 1. (697 aa)
	SAP30L	SAP30 like. (188 aa)
	GATAD2B	GATA zinc finger domain containing 2B. (593 aa)
	CHD3	Chromodomain helicase DNA binding protein 3. (2014 aa)
	LOC104660893	Hist_deacetyl domain-containing protein. (196 aa)
	GATAD2A	GATA-type domain-containing protein. (648 aa)
	HDAC1	Histone deacetylase 1; Responsible for the deacetylation of lysine residues on the N-terminal part of the core histones (H2A, H2B, H3 and H4). Histone deacetylation gives a tag for epigenetic repression and plays an important role in transcriptional regulation, cell cycle progression and developmental events. Histone deacetylases act via the formation of large multiprotein complexes. (477 aa)
	HDAC2	Histone deacetylase 2; Responsible for the deacetylation of lysine residues on the N-terminal part of the core histones (H2A, H2B, H3 and H4). Histone deacetylation gives a tag for epigenetic repression and plays an important role in transcriptional regulation, cell cycle progression and developmental events. Histone deacetylases act via the formation of large multiprotein complexes. (488 aa)
	ENSRROP00000018012	P66_CC domain-containing protein. (587 aa)
	ENSRROP00000019405	Hist_deacetyl domain-containing protein. (352 aa)
	ARID4A	AT-rich interaction domain 4A. (1258 aa)
	MTA3	Metastasis associated 1 family member 3. (594 aa)
	MBD2	Methyl-CpG binding domain protein 2. (319 aa)
	ENSRROP00000022017	Uncharacterized protein. (110 aa)
	ING1	Inhibitor of growth protein. (406 aa)
	BRMS1	BRMS1 transcriptional repressor and anoikis regulator. (246 aa)
	NYNRIN	NYN domain and retroviral integrase containing. (1898 aa)
	LOC104677352	Histone deacetylase 1; Responsible for the deacetylation of lysine residues on the N-terminal part of the core histones (H2A, H2B, H3 and H4). Histone deacetylation gives a tag for epigenetic repression and plays an important role in transcriptional regulation, cell cycle progression and developmental events. Histone deacetylases act via the formation of large multiprotein complexes. (484 aa)
	BRMS1L	BRMS1 like transcriptional repressor. (323 aa)
	SIN3B	SIN3 transcription regulator family member B. (1164 aa)
	ENSRROP00000034546	Uncharacterized protein. (94 aa)
	CHD5	Chromodomain helicase DNA binding protein 5. (1968 aa)
	ENSRROP00000035521	WD_REPEATS_REGION domain-containing protein. (356 aa)
	SUDS3	SDS3 homolog, SIN3A corepressor complex component. (328 aa)
	RBBP7	RB binding protein 7, chromatin remodeling factor. (469 aa)
	CHD4	Uncharacterized protein. (1913 aa)
	MBD3	Methyl-CpG binding domain protein 3. (196 aa)
	MTA2	Metastasis associated 1 family member 2. (673 aa)
	SIN3A	SIN3 transcription regulator family member A. (1273 aa)
	ENSRROP00000044391	WD_REPEATS_REGION domain-containing protein. (379 aa)
	ARID4B	AT-rich interaction domain 4B. (1314 aa)
	HDAC8	Histone deacetylase 8. (231 aa)

Your Current Organism:

Rhinopithecus roxellana

NCBI taxonomy Id: 61622
Other names: Pygathrix roxellana, R. roxellana, golden snub-nosed monkey

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ARID4A	ARID4B	ENSRROP00000020125	ENSRROP00000044493	AT-rich interaction domain 4A.	AT-rich interaction domain 4B.	0.567
ARID4A	BRMS1	ENSRROP00000020125	ENSRROP00000026204	AT-rich interaction domain 4A.	BRMS1 transcriptional repressor and anoikis regulator.	0.983
ARID4A	BRMS1L	ENSRROP00000020125	ENSRROP00000030186	AT-rich interaction domain 4A.	BRMS1 like transcriptional repressor.	0.980
ARID4A	CHD3	ENSRROP00000020125	ENSRROP00000010407	AT-rich interaction domain 4A.	Chromodomain helicase DNA binding protein 3.	0.696
ARID4A	CHD4	ENSRROP00000020125	ENSRROP00000038123	AT-rich interaction domain 4A.	Uncharacterized protein.	0.696
ARID4A	CHD5	ENSRROP00000020125	ENSRROP00000035349	AT-rich interaction domain 4A.	Chromodomain helicase DNA binding protein 5.	0.696
ARID4A	ENSRROP00000018012	ENSRROP00000020125	ENSRROP00000018012	AT-rich interaction domain 4A.	P66_CC domain-containing protein.	0.663
ARID4A	ENSRROP00000019405	ENSRROP00000020125	ENSRROP00000019405	AT-rich interaction domain 4A.	Hist_deacetyl domain-containing protein.	0.854
ARID4A	ENSRROP00000034546	ENSRROP00000020125	ENSRROP00000034546	AT-rich interaction domain 4A.	Uncharacterized protein.	0.663
ARID4A	ENSRROP00000035521	ENSRROP00000020125	ENSRROP00000035521	AT-rich interaction domain 4A.	WD_REPEATS_REGION domain-containing protein.	0.886
ARID4A	ENSRROP00000044391	ENSRROP00000020125	ENSRROP00000044391	AT-rich interaction domain 4A.	WD_REPEATS_REGION domain-containing protein.	0.886
ARID4A	GATAD2A	ENSRROP00000020125	ENSRROP00000015351	AT-rich interaction domain 4A.	GATA-type domain-containing protein.	0.663
ARID4A	GATAD2B	ENSRROP00000020125	ENSRROP00000010093	AT-rich interaction domain 4A.	GATA zinc finger domain containing 2B.	0.663
ARID4A	HDAC1	ENSRROP00000020125	ENSRROP00000015472	AT-rich interaction domain 4A.	Histone deacetylase 1; Responsible for the deacetylation of lysine residues on the N-terminal part of the core histones (H2A, H2B, H3 and H4). Histone deacetylation gives a tag for epigenetic repression and plays an important role in transcriptional regulation, cell cycle progression and developmental events. Histone deacetylases act via the formation of large multiprotein complexes.	0.854
ARID4A	HDAC2	ENSRROP00000020125	ENSRROP00000017767	AT-rich interaction domain 4A.	Histone deacetylase 2; Responsible for the deacetylation of lysine residues on the N-terminal part of the core histones (H2A, H2B, H3 and H4). Histone deacetylation gives a tag for epigenetic repression and plays an important role in transcriptional regulation, cell cycle progression and developmental events. Histone deacetylases act via the formation of large multiprotein complexes.	0.854
ARID4A	HDAC8	ENSRROP00000020125	ENSRROP00000045036	AT-rich interaction domain 4A.	Histone deacetylase 8.	0.854
ARID4A	ING1	ENSRROP00000020125	ENSRROP00000023176	AT-rich interaction domain 4A.	Inhibitor of growth protein.	0.686
ARID4A	LOC104660893	ENSRROP00000020125	ENSRROP00000012256	AT-rich interaction domain 4A.	Hist_deacetyl domain-containing protein.	0.854
ARID4A	LOC104677352	ENSRROP00000020125	ENSRROP00000029153	AT-rich interaction domain 4A.	Histone deacetylase 1; Responsible for the deacetylation of lysine residues on the N-terminal part of the core histones (H2A, H2B, H3 and H4). Histone deacetylation gives a tag for epigenetic repression and plays an important role in transcriptional regulation, cell cycle progression and developmental events. Histone deacetylases act via the formation of large multiprotein complexes.	0.854
ARID4A	MBD2	ENSRROP00000020125	ENSRROP00000020693	AT-rich interaction domain 4A.	Methyl-CpG binding domain protein 2.	0.542