(13 nodes) VCP-NPL4-UFD1 AAA ATPase complex, and Preribosome binding network (Rhinopithecus roxellana)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	FAF2	Fas associated factor family member 2. (445 aa)
	NPLOC4	NPL4 homolog, ubiquitin recognition factor. (616 aa)
	ENSRROP00000004263	Uncharacterized protein. (309 aa)
	SPATA5L1	Spermatogenesis associated 5 like 1. (753 aa)
	VCP	Valosin containing protein. (754 aa)
	ENSRROP00000021475	Uncharacterized protein. (282 aa)
	SPATA5	Spermatogenesis associated 5. (893 aa)
	PLAA	Phospholipase A2 activating protein. (795 aa)
	UFD1	Uncharacterized protein. (354 aa)
	VCPIP1	Valosin containing protein interacting protein 1. (1221 aa)
	UBAC2	UBA domain containing 2. (345 aa)
	UBXN7	UBX domain protein 7. (519 aa)
	YOD1	YOD1 deubiquitinase. (348 aa)

Your Current Organism:

Rhinopithecus roxellana

NCBI taxonomy Id: 61622
Other names: Pygathrix roxellana, R. roxellana, golden snub-nosed monkey

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSRROP00000004263	ENSRROP00000021475	ENSRROP00000004263	ENSRROP00000021475	Uncharacterized protein.	Uncharacterized protein.	0.781
ENSRROP00000004263	FAF2	ENSRROP00000004263	ENSRROP00000000733	Uncharacterized protein.	Fas associated factor family member 2.	0.478
ENSRROP00000004263	NPLOC4	ENSRROP00000004263	ENSRROP00000003675	Uncharacterized protein.	NPL4 homolog, ubiquitin recognition factor.	0.860
ENSRROP00000004263	PLAA	ENSRROP00000004263	ENSRROP00000027046	Uncharacterized protein.	Phospholipase A2 activating protein.	0.845
ENSRROP00000004263	SPATA5	ENSRROP00000004263	ENSRROP00000021946	Uncharacterized protein.	Spermatogenesis associated 5.	0.786
ENSRROP00000004263	SPATA5L1	ENSRROP00000004263	ENSRROP00000007935	Uncharacterized protein.	Spermatogenesis associated 5 like 1.	0.786
ENSRROP00000004263	UBXN7	ENSRROP00000004263	ENSRROP00000037555	Uncharacterized protein.	UBX domain protein 7.	0.910
ENSRROP00000004263	UFD1	ENSRROP00000004263	ENSRROP00000029121	Uncharacterized protein.	Uncharacterized protein.	0.781
ENSRROP00000004263	VCP	ENSRROP00000004263	ENSRROP00000019033	Uncharacterized protein.	Valosin containing protein.	0.937
ENSRROP00000004263	VCPIP1	ENSRROP00000004263	ENSRROP00000033637	Uncharacterized protein.	Valosin containing protein interacting protein 1.	0.887
ENSRROP00000004263	YOD1	ENSRROP00000004263	ENSRROP00000041119	Uncharacterized protein.	YOD1 deubiquitinase.	0.834
ENSRROP00000021475	ENSRROP00000004263	ENSRROP00000021475	ENSRROP00000004263	Uncharacterized protein.	Uncharacterized protein.	0.781
ENSRROP00000021475	FAF2	ENSRROP00000021475	ENSRROP00000000733	Uncharacterized protein.	Fas associated factor family member 2.	0.887
ENSRROP00000021475	NPLOC4	ENSRROP00000021475	ENSRROP00000003675	Uncharacterized protein.	NPL4 homolog, ubiquitin recognition factor.	0.969
ENSRROP00000021475	PLAA	ENSRROP00000021475	ENSRROP00000027046	Uncharacterized protein.	Phospholipase A2 activating protein.	0.921
ENSRROP00000021475	SPATA5	ENSRROP00000021475	ENSRROP00000021946	Uncharacterized protein.	Spermatogenesis associated 5.	0.843
ENSRROP00000021475	SPATA5L1	ENSRROP00000021475	ENSRROP00000007935	Uncharacterized protein.	Spermatogenesis associated 5 like 1.	0.843
ENSRROP00000021475	UBAC2	ENSRROP00000021475	ENSRROP00000035162	Uncharacterized protein.	UBA domain containing 2.	0.837
ENSRROP00000021475	UBXN7	ENSRROP00000021475	ENSRROP00000037555	Uncharacterized protein.	UBX domain protein 7.	0.999
ENSRROP00000021475	VCP	ENSRROP00000021475	ENSRROP00000019033	Uncharacterized protein.	Valosin containing protein.	0.957