31 items (Rhinopithecus roxellana) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	BTAF1	B-TFIID TATA-box binding protein associated factor 1. (1849 aa)
	LOC104658905	AAA domain-containing protein; Belongs to the AAA ATPase family. (440 aa)
	LOC104678360	Nuclear receptor domain-containing protein. (231 aa)
	PSMC5	Proteasome 26S subunit, ATPase 5; Belongs to the AAA ATPase family. (444 aa)
	HHEX	Hematopoietically expressed homeobox. (266 aa)
	GTF2A2	Transcription initiation factor IIA subunit 2; TFIIA is a component of the transcription machinery of RNA polymerase II and plays an important role in transcriptional activation; Belongs to the TFIIA subunit 2 family. (109 aa)
	ENSRROP00000037280	Transcription initiation factor IIA subunit 2; TFIIA is a component of the transcription machinery of RNA polymerase II and plays an important role in transcriptional activation; Belongs to the TFIIA subunit 2 family. (104 aa)
	ENSRROP00000036712	TFIIA_gamma_C domain-containing protein. (74 aa)
	LOC104681957	Uncharacterized protein; Belongs to the AAA ATPase family. (386 aa)
	LOC104655794	Transcription initiation factor TFIID subunit 13. (124 aa)
	CAND2	Cullin associated and neddylation dissociated 2 (putative). (1236 aa)
	RUVBL1	RuvB-like helicase; Proposed core component of the chromatin remodeling Ino80 complex which exhibits DNA- and nucleosome-activated ATPase activity and catalyzes ATP-dependent nucleosome sliding. (456 aa)
	BRF1	BRF1 RNA polymerase III transcription initiation factor subunit. (677 aa)
	GTF2A1	General transcription factor IIA subunit 1. (370 aa)
	DR1	Down-regulator of transcription 1. (176 aa)
	ENSRROP00000020820	AAA domain-containing protein; Belongs to the AAA ATPase family. (427 aa)
	LOC104658534	AAA domain-containing protein. (352 aa)
	YEATS2	YEATS domain containing 2. (1419 aa)
	PSMC1	Proteasome 26S subunit, ATPase 1. (440 aa)
	LOC104669754	Uncharacterized protein. (124 aa)
	DRAP1	DR1 associated protein 1. (250 aa)
	TAF1	TATA-box binding protein associated factor 1. (1196 aa)
	RUVBL2	RuvB-like helicase; Proposed core component of the chromatin remodeling Ino80 complex which exhibits DNA- and nucleosome-activated ATPase activity and catalyzes ATP-dependent nucleosome sliding. (463 aa)
	CAND1	Cullin associated and neddylation dissociated 1. (1230 aa)
	BRF2	BRF2 RNA polymerase III transcription initiation factor subunit. (419 aa)
	TAF12	TATA-box binding protein associated factor 12. (213 aa)
	GTF2B	General transcription factor IIB. (316 aa)
	LOC104682317	26S protease regulatory subunit 4. (440 aa)
	ENSRROP00000005618	Transcription initiation factor IIA subunit 2; TFIIA is a component of the transcription machinery of RNA polymerase II and plays an important role in transcriptional activation; Belongs to the TFIIA subunit 2 family. (105 aa)
	LOC104662043	26S protease regulatory subunit 4. (440 aa)
	THRA	Thyroid hormone receptor alpha. (590 aa)

Your Current Organism:

Rhinopithecus roxellana

NCBI taxonomy Id: 61622
Other names: Pygathrix roxellana, R. roxellana, golden snub-nosed monkey

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
BRF1	BRF2	ENSRROP00000001336	ENSRROP00000008798	BRF1 RNA polymerase III transcription initiation factor subunit.	BRF2 RNA polymerase III transcription initiation factor subunit.	0.598
BRF1	BTAF1	ENSRROP00000001336	ENSRROP00000005168	BRF1 RNA polymerase III transcription initiation factor subunit.	B-TFIID TATA-box binding protein associated factor 1.	0.420
BRF1	GTF2B	ENSRROP00000001336	ENSRROP00000006180	BRF1 RNA polymerase III transcription initiation factor subunit.	General transcription factor IIB.	0.588
BRF2	BRF1	ENSRROP00000008798	ENSRROP00000001336	BRF2 RNA polymerase III transcription initiation factor subunit.	BRF1 RNA polymerase III transcription initiation factor subunit.	0.598
BRF2	GTF2B	ENSRROP00000008798	ENSRROP00000006180	BRF2 RNA polymerase III transcription initiation factor subunit.	General transcription factor IIB.	0.481
BTAF1	BRF1	ENSRROP00000005168	ENSRROP00000001336	B-TFIID TATA-box binding protein associated factor 1.	BRF1 RNA polymerase III transcription initiation factor subunit.	0.420
BTAF1	DR1	ENSRROP00000005168	ENSRROP00000022558	B-TFIID TATA-box binding protein associated factor 1.	Down-regulator of transcription 1.	0.888
BTAF1	DRAP1	ENSRROP00000005168	ENSRROP00000017099	B-TFIID TATA-box binding protein associated factor 1.	DR1 associated protein 1.	0.948
BTAF1	GTF2A1	ENSRROP00000005168	ENSRROP00000024065	B-TFIID TATA-box binding protein associated factor 1.	General transcription factor IIA subunit 1.	0.424
BTAF1	GTF2B	ENSRROP00000005168	ENSRROP00000006180	B-TFIID TATA-box binding protein associated factor 1.	General transcription factor IIB.	0.687
BTAF1	RUVBL1	ENSRROP00000005168	ENSRROP00000027138	B-TFIID TATA-box binding protein associated factor 1.	RuvB-like helicase; Proposed core component of the chromatin remodeling Ino80 complex which exhibits DNA- and nucleosome-activated ATPase activity and catalyzes ATP-dependent nucleosome sliding.	0.436
BTAF1	TAF1	ENSRROP00000005168	ENSRROP00000014310	B-TFIID TATA-box binding protein associated factor 1.	TATA-box binding protein associated factor 1.	0.621
BTAF1	TAF12	ENSRROP00000005168	ENSRROP00000007016	B-TFIID TATA-box binding protein associated factor 1.	TATA-box binding protein associated factor 12.	0.603
DR1	BTAF1	ENSRROP00000022558	ENSRROP00000005168	Down-regulator of transcription 1.	B-TFIID TATA-box binding protein associated factor 1.	0.888
DR1	DRAP1	ENSRROP00000022558	ENSRROP00000017099	Down-regulator of transcription 1.	DR1 associated protein 1.	0.990
DR1	GTF2B	ENSRROP00000022558	ENSRROP00000006180	Down-regulator of transcription 1.	General transcription factor IIB.	0.615
DR1	TAF12	ENSRROP00000022558	ENSRROP00000007016	Down-regulator of transcription 1.	TATA-box binding protein associated factor 12.	0.440
DR1	YEATS2	ENSRROP00000022558	ENSRROP00000019413	Down-regulator of transcription 1.	YEATS domain containing 2.	0.935
DRAP1	BTAF1	ENSRROP00000017099	ENSRROP00000005168	DR1 associated protein 1.	B-TFIID TATA-box binding protein associated factor 1.	0.948
DRAP1	DR1	ENSRROP00000017099	ENSRROP00000022558	DR1 associated protein 1.	Down-regulator of transcription 1.	0.990