STRINGSTRING
LOC104657389 LOC104657389 SNRPF SNRPF ENSRROP00000044639 ENSRROP00000044639 ALYREF ALYREF LOC104675844 LOC104675844 SNRPG SNRPG SF3B3 SF3B3 ENSRROP00000045737 ENSRROP00000045737 LOC104656961 LOC104656961 ENSRROP00000034891 ENSRROP00000034891 LOC104673734 LOC104673734 SNW1 SNW1 ENSRROP00000035789 ENSRROP00000035789 SRSF1 SRSF1 ENSRROP00000036150 ENSRROP00000036150 PLRG1 PLRG1 PPIE PPIE SF3A1 SF3A1 ENSRROP00000043524 ENSRROP00000043524 BCAS2 BCAS2 AQR AQR LSM3-3 LSM3-3 LSM3-2 LSM3-2 LOC104659628 LOC104659628 PRPF19 PRPF19 HNRNPU HNRNPU RBM44 RBM44 EIF4A3 EIF4A3 PABPC1 PABPC1 EFTUD2 EFTUD2 PRPF4B PRPF4B SF3B6 SF3B6 CACTIN CACTIN SNRPG-2 SNRPG-2 ENSRROP00000017857 ENSRROP00000017857 ENSRROP00000017880 ENSRROP00000017880 ENSRROP00000018242 ENSRROP00000018242 ESS2 ESS2 FRG1 FRG1 WDR83 WDR83 ENSRROP00000013502 ENSRROP00000013502 GPATCH1 GPATCH1 PNN PNN SNRPD1 SNRPD1 SNRNP40 SNRNP40 DHX38 DHX38 ENSRROP00000008557 ENSRROP00000008557 HNRNPA3 HNRNPA3 ENSRROP00000008778 ENSRROP00000008778 DDX23 DDX23 CDC5L CDC5L PPIL3 PPIL3 CDC40 CDC40 ENSRROP00000010290 ENSRROP00000010290 ENSRROP00000010427 ENSRROP00000010427 ENSRROP00000010726 ENSRROP00000010726 ENSRROP00000010844 ENSRROP00000010844 ENSRROP00000011286 ENSRROP00000011286 C19orf54 C19orf54 MAGOH MAGOH LSM2 LSM2 LOC104653904 LOC104653904 SF3A2 SF3A2 SF3B2 SF3B2 ENSRROP00000021462 ENSRROP00000021462 SNRPD2 SNRPD2 TFIP11 TFIP11 SRRM1 SRRM1 PPWD1 PPWD1 ZCCHC8 ZCCHC8 ENSRROP00000012831 ENSRROP00000012831 HNRNPA1 HNRNPA1 LOC104672089 LOC104672089 DHX35 DHX35 SNRPD3 SNRPD3 LSM3 LSM3 ENSRROP00000018465 ENSRROP00000018465 SF3A3 SF3A3 DDX5 DDX5 HNRNPF HNRNPF SYF2 SYF2 LOC104666382 LOC104666382 SYNCRIP SYNCRIP ENSRROP00000001510 ENSRROP00000001510 SLU7 SLU7 ENSRROP00000002380 ENSRROP00000002380 SNRPB2 SNRPB2 DDX41 DDX41 ENSRROP00000024396 ENSRROP00000024396 DHX8 DHX8 SNRPB SNRPB BUD31 BUD31 ENSRROP00000025753 ENSRROP00000025753 ENSRROP00000026172 ENSRROP00000026172 ENSRROP00000026203 ENSRROP00000026203 HNRNPR HNRNPR ENSRROP00000026765 ENSRROP00000026765 CWC15 CWC15 CWC22 CWC22 SNRNP200 SNRNP200 PRPF8 PRPF8 HNRNPM HNRNPM SNRPA1 SNRPA1 RALY RALY PPIL2 PPIL2 MAGOHB MAGOHB WDR25 WDR25 LOC104662071 LOC104662071 LOC104678249 LOC104678249 MTREX MTREX RBM8A RBM8A CRNKL1 CRNKL1 LSM7 LSM7 ENSRROP00000020651 ENSRROP00000020651 ENSRROP00000034505 ENSRROP00000034505 XAB2 XAB2 SF3B1 SF3B1 ENSRROP00000014292 ENSRROP00000014292 PPIL1 PPIL1 SART1 SART1 LOC104676547 LOC104676547 HNRNPK HNRNPK LOC104660116 LOC104660116 SNRPE SNRPE ENSRROP00000016206 ENSRROP00000016206 ISY1 ISY1 ENSRROP00000016405 ENSRROP00000016405
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
LOC104657389Sm domain-containing protein. (86 aa)
SNRPFSm domain-containing protein. (127 aa)
ENSRROP00000044639Small nuclear ribonucleoprotein G; Plays role in pre-mRNA splicing as core component of the SMN- Sm complex that mediates spliceosomal snRNP assembly and as component of the spliceosomal U1, U2, U4 and U5 small nuclear ribonucleoproteins (snRNPs), the building blocks of the spliceosome. Component of both the pre-catalytic spliceosome B complex and activated spliceosome C complexes. Is also a component of the minor U12 spliceosome. As part of the U7 snRNP it is involved in histone 3'-end processing. (72 aa)
ALYREFAly/REF export factor. (279 aa)
LOC104675844Uncharacterized protein. (367 aa)
SNRPGSmall nuclear ribonucleoprotein G; Plays role in pre-mRNA splicing as core component of the SMN- Sm complex that mediates spliceosomal snRNP assembly and as component of the spliceosomal U1, U2, U4 and U5 small nuclear ribonucleoproteins (snRNPs), the building blocks of the spliceosome. Component of both the pre-catalytic spliceosome B complex and activated spliceosome C complexes. Is also a component of the minor U12 spliceosome. As part of the U7 snRNP it is involved in histone 3'-end processing. (76 aa)
SF3B3Splicing factor 3b subunit 3. (1217 aa)
ENSRROP00000045737Uncharacterized protein; Belongs to the DEAD box helicase family. (740 aa)
LOC104656961Polyadenylate-binding protein; Binds the poly(A) tail of mRNA. Belongs to the polyadenylate-binding protein type-1 family. (618 aa)
ENSRROP00000034891Uncharacterized protein. (345 aa)
LOC104673734RRM domain-containing protein. (380 aa)
SNW1SNW domain containing 1. (536 aa)
ENSRROP00000035789Uncharacterized protein. (368 aa)
SRSF1Uncharacterized protein. (253 aa)
ENSRROP00000036150PWI domain-containing protein. (408 aa)
PLRG1Pleiotropic regulator 1. (514 aa)
PPIEPeptidyl-prolyl cis-trans isomerase E; Catalyzes the cis-trans isomerization of proline imidic peptide bonds in proteins; Belongs to the cyclophilin-type PPIase family. PPIase E subfamily. (320 aa)
SF3A1Splicing factor 3a subunit 1. (793 aa)
ENSRROP00000043524Uncharacterized protein. (528 aa)
BCAS2BCAS2 pre-mRNA processing factor. (209 aa)
AQRRNA helicase aquarius; Intron-binding spliceosomal protein required to link pre-mRNA splicing and snoRNP (small nucleolar ribonucleoprotein) biogenesis. Plays a key role in position-dependent assembly of intron-encoded box C/D small snoRNP, splicing being required for snoRNP assembly. May act by helping the folding of the snoRNA sequence. Binds to intron of pre- mRNAs in a sequence-independent manner, contacting the region between snoRNA and the branchpoint of introns (40 nucleotides upstream of the branchpoint) during the late stages of splicing. (1492 aa)
LSM3-3U6 snRNA-associated Sm-like protein LSm3; Binds specifically to the 3'-terminal U-tract of U6 snRNA. (94 aa)
LSM3-2U6 snRNA-associated Sm-like protein LSm3; Binds specifically to the 3'-terminal U-tract of U6 snRNA. (94 aa)
LOC104659628Uncharacterized protein. (145 aa)
PRPF19Pre-mRNA processing factor 19. (518 aa)
HNRNPUHeterogeneous nuclear ribonucleoprotein U. (806 aa)
RBM44RNA binding motif protein 44. (1055 aa)
EIF4A3Eukaryotic translation initiation factor 4A3; Belongs to the DEAD box helicase family. (411 aa)
PABPC1Polyadenylate-binding protein; Binds the poly(A) tail of mRNA. Belongs to the polyadenylate-binding protein type-1 family. (637 aa)
EFTUD2Elongation factor Tu GTP binding domain containing 2. (972 aa)
PRPF4BPre-mRNA processing factor 4B. (1007 aa)
SF3B6Splicing factor 3b subunit 6. (125 aa)
CACTINCactin, spliceosome C complex subunit. (724 aa)
SNRPG-2Small nuclear ribonucleoprotein G; Plays role in pre-mRNA splicing as core component of the SMN- Sm complex that mediates spliceosomal snRNP assembly and as component of the spliceosomal U1, U2, U4 and U5 small nuclear ribonucleoproteins (snRNPs), the building blocks of the spliceosome. Component of both the pre-catalytic spliceosome B complex and activated spliceosome C complexes. Is also a component of the minor U12 spliceosome. As part of the U7 snRNP it is involved in histone 3'-end processing. (74 aa)
ENSRROP00000017857Uncharacterized protein. (67 aa)
ENSRROP00000017880RNA-binding protein 8A; Core component of the splicing-dependent multiprotein exon junction complex (EJC) deposited at splice junctions on mRNAs. (169 aa)
ENSRROP00000018242Uncharacterized protein. (684 aa)
ESS2Ess-2 splicing factor homolog. (476 aa)
FRG1FSHD region gene 1. (250 aa)
WDR83WD repeat domain 83. (346 aa)
ENSRROP00000013502WD_REPEATS_REGION domain-containing protein. (354 aa)
GPATCH1G-patch domain containing 1. (931 aa)
PNNPinin, desmosome associated protein. (719 aa)
SNRPD1Small nuclear ribonucleoprotein Sm D1; Plays role in pre-mRNA splicing as core component of the SMN- Sm complex that mediates spliceosomal snRNP assembly and as component of the spliceosomal U1, U2, U4 and U5 small nuclear ribonucleoproteins (snRNPs), the building blocks of the spliceosome. Component of both the pre-catalytic spliceosome B complex and activated spliceosome C complexes. Is also a component of the minor U12 spliceosome. May act as a charged protein scaffold to promote snRNP assembly or strengthen snRNP-snRNP interactions through non-specific electrostatic contacts with RNA. (130 aa)
SNRNP40Small nuclear ribonucleoprotein U5 subunit 40. (357 aa)
DHX38DEAH-box helicase 38. (1227 aa)
ENSRROP00000008557Uncharacterized protein. (552 aa)
HNRNPA3Uncharacterized protein. (356 aa)
ENSRROP00000008778Uncharacterized protein. (277 aa)
DDX23DEAD-box helicase 23. (820 aa)
CDC5LCell division cycle 5 like. (802 aa)
PPIL3Peptidyl-prolyl cis-trans isomerase; PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides; Belongs to the cyclophilin-type PPIase family. (165 aa)
CDC40Cell division cycle 40. (579 aa)
ENSRROP00000010290Small nuclear ribonucleoprotein G; Plays role in pre-mRNA splicing as core component of the SMN- Sm complex that mediates spliceosomal snRNP assembly and as component of the spliceosomal U1, U2, U4 and U5 small nuclear ribonucleoproteins (snRNPs), the building blocks of the spliceosome. Component of both the pre-catalytic spliceosome B complex and activated spliceosome C complexes. Is also a component of the minor U12 spliceosome. As part of the U7 snRNP it is involved in histone 3'-end processing. (66 aa)
ENSRROP00000010427Uncharacterized protein. (228 aa)
ENSRROP00000010726Uncharacterized protein. (291 aa)
ENSRROP00000010844SEC63 domain-containing protein. (325 aa)
ENSRROP00000011286RRM domain-containing protein. (274 aa)
C19orf54Chromosome 19 open reading frame 54. (351 aa)
MAGOHMago homolog, exon junction complex subunit. (283 aa)
LSM2U6 snRNA-associated Sm-like protein LSm2; Binds specifically to the 3'-terminal U-tract of U6 snRNA. (95 aa)
LOC104653904Uncharacterized protein. (307 aa)
SF3A2Splicing factor 3a subunit 2. (470 aa)
SF3B2Splicing factor 3b subunit 2. (895 aa)
ENSRROP00000021462Uncharacterized protein. (348 aa)
SNRPD2Small nuclear ribonucleoprotein Sm D2; Plays role in pre-mRNA splicing as core component of the SMN- Sm complex that mediates spliceosomal snRNP assembly and as component of the spliceosomal U1, U2, U4 and U5 small nuclear ribonucleoproteins (snRNPs), the building blocks of the spliceosome. Component of both the pre-catalytic spliceosome B complex and activated spliceosome C complexes. Is also a component of the minor U12 spliceosome. (118 aa)
TFIP11Tuftelin-interacting protein 11; Involved in pre-mRNA splicing, specifically in spliceosome disassembly during late-stage splicing events. Intron turnover seems to proceed through reactions in two lariat-intron associated complexes termed Intron Large (IL) and Intron Small (IS). In cooperation with DHX15 seems to mediate the transition of the U2, U5 and U6 snRNP- containing IL complex to the snRNP-free IS complex leading to efficient debranching and turnover of excised introns. May play a role in the differentiation of ameloblasts and odontoblasts or in the forming of the enamel extrac [...] (837 aa)
SRRM1Serine and arginine repetitive matrix 1. (913 aa)
PPWD1Peptidylprolyl isomerase domain and WD repeat containing 1. (646 aa)
ZCCHC8Zinc finger CCHC-type containing 8. (707 aa)
ENSRROP00000012831Sm domain-containing protein. (82 aa)
HNRNPA1Uncharacterized protein. (372 aa)
LOC104672089Small nuclear ribonucleoprotein Sm D2; Plays role in pre-mRNA splicing as core component of the SMN- Sm complex that mediates spliceosomal snRNP assembly and as component of the spliceosomal U1, U2, U4 and U5 small nuclear ribonucleoproteins (snRNPs), the building blocks of the spliceosome. Component of both the pre-catalytic spliceosome B complex and activated spliceosome C complexes. Is also a component of the minor U12 spliceosome. (109 aa)
DHX35DEAH-box helicase 35. (711 aa)
SNRPD3Small nuclear ribonucleoprotein Sm D3; Plays role in pre-mRNA splicing as core component of the SMN- Sm complex that mediates spliceosomal snRNP assembly and as component of the spliceosomal U1, U2, U4 and U5 small nuclear ribonucleoproteins (snRNPs), the building blocks of the spliceosome. Component of both the pre-catalytic spliceosome B complex and activated spliceosome C complexes. Is also a component of the minor U12 spliceosome. As part of the U7 snRNP it is involved in histone pre-mRNA 3'-end processing. (126 aa)
LSM3U6 snRNA-associated Sm-like protein LSm3; Binds specifically to the 3'-terminal U-tract of U6 snRNA. (102 aa)
ENSRROP00000018465Uncharacterized protein. (370 aa)
SF3A3Splicing factor 3a subunit 3. (504 aa)
DDX5DEAD-box helicase 5; Belongs to the DEAD box helicase family. (614 aa)
HNRNPFHeterogeneous nuclear ribonucleoprotein F. (415 aa)
SYF2SYF2 pre-mRNA splicing factor. (243 aa)
LOC104666382Uncharacterized protein. (427 aa)
SYNCRIPSynaptotagmin binding cytoplasmic RNA interacting protein. (595 aa)
ENSRROP00000001510Uncharacterized protein. (425 aa)
SLU7SLU7 homolog, splicing factor. (586 aa)
ENSRROP00000002380RRM domain-containing protein. (295 aa)
SNRPB2Small nuclear ribonucleoprotein polypeptide B2. (225 aa)
DDX41DEAD-box helicase 41. (636 aa)
ENSRROP00000024396Uncharacterized protein. (343 aa)
DHX8DEAH-box helicase 8. (1220 aa)
SNRPBSmall nuclear ribonucleoprotein-associated protein. (240 aa)
BUD31BUD31 homolog. (144 aa)
ENSRROP00000025753Sm domain-containing protein. (56 aa)
ENSRROP00000026172Uncharacterized protein. (87 aa)
ENSRROP00000026203RRM domain-containing protein. (269 aa)
HNRNPRHeterogeneous nuclear ribonucleoprotein R. (633 aa)
ENSRROP00000026765Small nuclear ribonucleoprotein G; Plays role in pre-mRNA splicing as core component of the SMN- Sm complex that mediates spliceosomal snRNP assembly and as component of the spliceosomal U1, U2, U4 and U5 small nuclear ribonucleoproteins (snRNPs), the building blocks of the spliceosome. Component of both the pre-catalytic spliceosome B complex and activated spliceosome C complexes. Is also a component of the minor U12 spliceosome. As part of the U7 snRNP it is involved in histone 3'-end processing. (74 aa)
CWC15CWC15 spliceosome associated protein homolog. (229 aa)
CWC22CWC22 spliceosome associated protein homolog. (907 aa)
SNRNP200Small nuclear ribonucleoprotein U5 subunit 200. (2146 aa)
PRPF8Pre-mRNA processing factor 8. (2339 aa)
HNRNPMUncharacterized protein. (730 aa)
SNRPA1Small nuclear ribonucleoprotein polypeptide A. (255 aa)
RALYRALY heterogeneous nuclear ribonucleoprotein. (315 aa)
PPIL2Peptidylprolyl isomerase like 2. (520 aa)
MAGOHBMago homolog B, exon junction complex subunit. (148 aa)
WDR25WD repeat domain 25. (544 aa)
LOC104662071Uncharacterized protein. (308 aa)
LOC104678249U6 snRNA-associated Sm-like protein LSm3; Binds specifically to the 3'-terminal U-tract of U6 snRNA. (89 aa)
MTREXMtr4 exosome RNA helicase. (1042 aa)
RBM8ARNA-binding protein 8A; Core component of the splicing-dependent multiprotein exon junction complex (EJC) deposited at splice junctions on mRNAs. (174 aa)
CRNKL1Crooked neck pre-mRNA splicing factor 1. (687 aa)
LSM7LSM7 homolog, U6 small nuclear RNA and mRNA degradation associated. (103 aa)
ENSRROP00000020651Small nuclear ribonucleoprotein G; Plays role in pre-mRNA splicing as core component of the SMN- Sm complex that mediates spliceosomal snRNP assembly and as component of the spliceosomal U1, U2, U4 and U5 small nuclear ribonucleoproteins (snRNPs), the building blocks of the spliceosome. Component of both the pre-catalytic spliceosome B complex and activated spliceosome C complexes. Is also a component of the minor U12 spliceosome. As part of the U7 snRNP it is involved in histone 3'-end processing. (67 aa)
ENSRROP00000034505RRM domain-containing protein. (194 aa)
XAB2XPA binding protein 2. (860 aa)
SF3B1Splicing factor 3b subunit 1. (1304 aa)
ENSRROP00000014292Small nuclear ribonucleoprotein E; Plays role in pre-mRNA splicing as core component of the SMN- Sm complex that mediates spliceosomal snRNP assembly and as component of the spliceosomal U1, U2, U4 and U5 small nuclear ribonucleoproteins (snRNPs), the building blocks of the spliceosome. Component of both the pre-catalytic spliceosome B complex and activated spliceosome C complexes. Is also a component of the minor U12 spliceosome. As part of the U7 snRNP it is involved in histone 3'-end processing. May indirectly play a role in hair development. (85 aa)
PPIL1Peptidyl-prolyl cis-trans isomerase; PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides; Belongs to the cyclophilin-type PPIase family. (166 aa)
SART1Spliceosome associated factor 1, recruiter of U4/U6.U5 tri-snRNP. (800 aa)
LOC104676547RRM domain-containing protein. (243 aa)
HNRNPKUncharacterized protein. (464 aa)
LOC104660116Uncharacterized protein. (241 aa)
SNRPESmall nuclear ribonucleoprotein E; Plays role in pre-mRNA splicing as core component of the SMN- Sm complex that mediates spliceosomal snRNP assembly and as component of the spliceosomal U1, U2, U4 and U5 small nuclear ribonucleoproteins (snRNPs), the building blocks of the spliceosome. Component of both the pre-catalytic spliceosome B complex and activated spliceosome C complexes. Is also a component of the minor U12 spliceosome. As part of the U7 snRNP it is involved in histone 3'-end processing. May indirectly play a role in hair development. (92 aa)
ENSRROP00000016206RRM domain-containing protein. (381 aa)
ISY1Uncharacterized protein. (307 aa)
ENSRROP00000016405Uncharacterized protein. (413 aa)
Your Current Organism:
Rhinopithecus roxellana
NCBI taxonomy Id: 61622
Other names: Pygathrix roxellana, R. roxellana, golden snub-nosed monkey
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