(19 nodes) Aminotransferase, class I/classII network (Rhinopithecus roxellana)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	GPT	Glutamic--pyruvic transaminase. (498 aa)
	ALAS1	5-aminolevulinate synthase. (640 aa)
	GCAT	Glycine C-acetyltransferase. (419 aa)
	ACCS	1-aminocyclopropane-1-carboxylate synthase homolog (inactive). (501 aa)
	SPTLC3	Serine palmitoyltransferase long chain base subunit 3. (552 aa)
	ACCSL	1-aminocyclopropane-1-carboxylate synthase homolog (inactive) like. (568 aa)
	KYAT3	Kynurenine aminotransferase 3. (454 aa)
	ALAS2	5-aminolevulinate synthase. (587 aa)
	GOT1L1	Glutamic-oxaloacetic transaminase 1 like 1. (415 aa)
	AADAT	Aminoadipate aminotransferase. (425 aa)
	SPTLC1	Serine palmitoyltransferase long chain base subunit 1. (473 aa)
	TAT	Tyrosine aminotransferase; Transaminase involved in tyrosine breakdown. Converts tyrosine to p-hydroxyphenylpyruvate. (454 aa)
	ENSRROP00000026864	Aspartate aminotransferase. (389 aa)
	GOT2	Aspartate aminotransferase. (430 aa)
	SPTLC2	Serine palmitoyltransferase long chain base subunit 2. (560 aa)
	GPT2	Glutamic--pyruvic transaminase 2. (523 aa)
	ENSRROP00000040164	Aminotran_1_2 domain-containing protein. (363 aa)
	KYAT1	Aminotran_1_2 domain-containing protein. (505 aa)
	GOT1	Aspartate aminotransferase. (413 aa)

Your Current Organism:

Rhinopithecus roxellana

NCBI taxonomy Id: 61622
Other names: Pygathrix roxellana, R. roxellana, golden snub-nosed monkey

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
AADAT	ENSRROP00000026864	ENSRROP00000021296	ENSRROP00000026864	Aminoadipate aminotransferase.	Aspartate aminotransferase.	0.427
AADAT	ENSRROP00000040164	ENSRROP00000021296	ENSRROP00000040164	Aminoadipate aminotransferase.	Aminotran_1_2 domain-containing protein.	0.427
AADAT	GOT1	ENSRROP00000021296	ENSRROP00000044303	Aminoadipate aminotransferase.	Aspartate aminotransferase.	0.551
AADAT	GOT1L1	ENSRROP00000021296	ENSRROP00000021289	Aminoadipate aminotransferase.	Glutamic-oxaloacetic transaminase 1 like 1.	0.435
AADAT	GOT2	ENSRROP00000021296	ENSRROP00000033924	Aminoadipate aminotransferase.	Aspartate aminotransferase.	0.427
AADAT	KYAT1	ENSRROP00000021296	ENSRROP00000042964	Aminoadipate aminotransferase.	Aminotran_1_2 domain-containing protein.	0.594
AADAT	KYAT3	ENSRROP00000021296	ENSRROP00000018693	Aminoadipate aminotransferase.	Kynurenine aminotransferase 3.	0.941
ALAS1	ALAS2	ENSRROP00000002611	ENSRROP00000020481	5-aminolevulinate synthase.	5-aminolevulinate synthase.	0.453
ALAS1	GCAT	ENSRROP00000002611	ENSRROP00000004445	5-aminolevulinate synthase.	Glycine C-acetyltransferase.	0.909
ALAS2	ALAS1	ENSRROP00000020481	ENSRROP00000002611	5-aminolevulinate synthase.	5-aminolevulinate synthase.	0.453
ENSRROP00000026864	AADAT	ENSRROP00000026864	ENSRROP00000021296	Aspartate aminotransferase.	Aminoadipate aminotransferase.	0.427
ENSRROP00000026864	GOT1	ENSRROP00000026864	ENSRROP00000044303	Aspartate aminotransferase.	Aspartate aminotransferase.	0.700
ENSRROP00000026864	GOT1L1	ENSRROP00000026864	ENSRROP00000021289	Aspartate aminotransferase.	Glutamic-oxaloacetic transaminase 1 like 1.	0.606
ENSRROP00000026864	GPT	ENSRROP00000026864	ENSRROP00000044477	Aspartate aminotransferase.	Glutamic--pyruvic transaminase.	0.525
ENSRROP00000026864	GPT2	ENSRROP00000026864	ENSRROP00000038146	Aspartate aminotransferase.	Glutamic--pyruvic transaminase 2.	0.525
ENSRROP00000026864	KYAT1	ENSRROP00000026864	ENSRROP00000042964	Aspartate aminotransferase.	Aminotran_1_2 domain-containing protein.	0.476
ENSRROP00000026864	KYAT3	ENSRROP00000026864	ENSRROP00000018693	Aspartate aminotransferase.	Kynurenine aminotransferase 3.	0.480
ENSRROP00000026864	TAT	ENSRROP00000026864	ENSRROP00000022991	Aspartate aminotransferase.	Tyrosine aminotransferase; Transaminase involved in tyrosine breakdown. Converts tyrosine to p-hydroxyphenylpyruvate.	0.552
ENSRROP00000040164	AADAT	ENSRROP00000040164	ENSRROP00000021296	Aminotran_1_2 domain-containing protein.	Aminoadipate aminotransferase.	0.427
ENSRROP00000040164	GOT1	ENSRROP00000040164	ENSRROP00000044303	Aminotran_1_2 domain-containing protein.	Aspartate aminotransferase.	0.699