(22 nodes) LSM domain superfamily network (Amphilophus citrinellus)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

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experimentally determined

Predicted Interactions

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Others

textmining

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protein homology

Your Input:
	ENSACIP00000018559	Small nuclear ribonucleoprotein-associated protein. (225 aa)
	ENSACIP00000017055	Small nuclear ribonucleoprotein polypeptide F. (85 aa)
	ENSACIP00000015842	LSM family member 14B. (345 aa)
	ENSACIP00000014479	Small nuclear ribonucleoprotein Sm D1; Essential for pre-mRNA splicing. Implicated in the formation of stable, biologically active snRNP structures. Belongs to the snRNP core protein family. (112 aa)
	LSM4	U6 snRNA-associated Sm-like protein LSm4; Binds specifically to the 3'-terminal U-tract of U6 snRNA. (115 aa)
	ENSACIP00000006228	LSM14A mRNA processing body assembly factor b. (395 aa)
	ENSACIP00000011470	Small nuclear ribonucleoprotein Sm D3. (127 aa)
	ENSACIP00000024715	LSM5 homolog, U6 small nuclear RNA and mRNA degradation associated. (56 aa)
	ENSACIP00000008343	Small nuclear ribonucleoprotein G. (72 aa)
	ENSACIP00000009979	Smx5. (151 aa)
	ENSACIP00000029292	Small nuclear ribonucleoprotein Sm D2. (108 aa)
	ENSACIP00000025461	N(alpha)-acetyltransferase 38, NatC auxiliary subunit. (77 aa)
	ENSACIP00000008342	LSM7 homolog, U6 small nuclear RNA and mRNA degradation associated. (126 aa)
	ENSACIP00000021527	LSM6 homolog, U6 small nuclear RNA and mRNA degradation associated. (80 aa)
	ENSACIP00000025263	Small nuclear ribonucleoprotein E; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family. (71 aa)
	LSM1	U6 snRNA-associated Sm-like protein LSm1; Probably involved with other LSm subunits in the general process of degradation of mRNAs. (120 aa)
	ENSACIP00000003951	LSM14 domain-containing protein. (123 aa)
	ENSACIP00000005802	LSM3 homolog, U6 small nuclear RNA and mRNA degradation associated. (143 aa)
	ENSACIP00000020531	LSM14A mRNA processing body assembly factor a. (504 aa)
	ENSACIP00000020513	LSM11, U7 small nuclear RNA associated. (343 aa)
	LSM10	LSM10, U7 small nuclear RNA associated. (151 aa)
	LSM8	U6 snRNA-associated Sm-like protein LSm8; Plays role in pre-mRNA splicing as component of the U4/U6-U5 tri-snRNP complex that is involved in spliceosome assembly, and as component of the precatalytic spliceosome (spliceosome B complex). The heptameric LSM2-8 complex binds specifically to the 3'-terminal U-tract of U6 snRNA. (75 aa)

Your Current Organism:

Amphilophus citrinellus

NCBI taxonomy Id: 61819
Other names: A. citrinellus, Archocentrus citrinellum, Cichlasoma citrinellum, Herichthys citrinellus, Heros citrinellus, Midas cichlid, red devil, red devil cichlid

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSACIP00000005802	ENSACIP00000008342	ENSACIP00000005802	ENSACIP00000008342	LSM3 homolog, U6 small nuclear RNA and mRNA degradation associated.	LSM7 homolog, U6 small nuclear RNA and mRNA degradation associated.	0.996
ENSACIP00000005802	ENSACIP00000008343	ENSACIP00000005802	ENSACIP00000008343	LSM3 homolog, U6 small nuclear RNA and mRNA degradation associated.	Small nuclear ribonucleoprotein G.	0.991
ENSACIP00000005802	ENSACIP00000009979	ENSACIP00000005802	ENSACIP00000009979	LSM3 homolog, U6 small nuclear RNA and mRNA degradation associated.	Smx5.	0.999
ENSACIP00000005802	ENSACIP00000011470	ENSACIP00000005802	ENSACIP00000011470	LSM3 homolog, U6 small nuclear RNA and mRNA degradation associated.	Small nuclear ribonucleoprotein Sm D3.	0.996
ENSACIP00000005802	ENSACIP00000014479	ENSACIP00000005802	ENSACIP00000014479	LSM3 homolog, U6 small nuclear RNA and mRNA degradation associated.	Small nuclear ribonucleoprotein Sm D1; Essential for pre-mRNA splicing. Implicated in the formation of stable, biologically active snRNP structures. Belongs to the snRNP core protein family.	0.991
ENSACIP00000005802	ENSACIP00000017055	ENSACIP00000005802	ENSACIP00000017055	LSM3 homolog, U6 small nuclear RNA and mRNA degradation associated.	Small nuclear ribonucleoprotein polypeptide F.	0.989
ENSACIP00000005802	ENSACIP00000021527	ENSACIP00000005802	ENSACIP00000021527	LSM3 homolog, U6 small nuclear RNA and mRNA degradation associated.	LSM6 homolog, U6 small nuclear RNA and mRNA degradation associated.	0.999
ENSACIP00000005802	ENSACIP00000024715	ENSACIP00000005802	ENSACIP00000024715	LSM3 homolog, U6 small nuclear RNA and mRNA degradation associated.	LSM5 homolog, U6 small nuclear RNA and mRNA degradation associated.	0.998
ENSACIP00000005802	ENSACIP00000025263	ENSACIP00000005802	ENSACIP00000025263	LSM3 homolog, U6 small nuclear RNA and mRNA degradation associated.	Small nuclear ribonucleoprotein E; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family.	0.998
ENSACIP00000005802	ENSACIP00000025461	ENSACIP00000005802	ENSACIP00000025461	LSM3 homolog, U6 small nuclear RNA and mRNA degradation associated.	N(alpha)-acetyltransferase 38, NatC auxiliary subunit.	0.952
ENSACIP00000005802	ENSACIP00000029292	ENSACIP00000005802	ENSACIP00000029292	LSM3 homolog, U6 small nuclear RNA and mRNA degradation associated.	Small nuclear ribonucleoprotein Sm D2.	0.994
ENSACIP00000005802	LSM1	ENSACIP00000005802	ENSACIP00000025292	LSM3 homolog, U6 small nuclear RNA and mRNA degradation associated.	U6 snRNA-associated Sm-like protein LSm1; Probably involved with other LSm subunits in the general process of degradation of mRNAs.	0.985
ENSACIP00000005802	LSM10	ENSACIP00000005802	ENSACIP00000019829	LSM3 homolog, U6 small nuclear RNA and mRNA degradation associated.	LSM10, U7 small nuclear RNA associated.	0.945
ENSACIP00000005802	LSM4	ENSACIP00000005802	ENSACIP00000014068	LSM3 homolog, U6 small nuclear RNA and mRNA degradation associated.	U6 snRNA-associated Sm-like protein LSm4; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	0.996
ENSACIP00000005802	LSM8	ENSACIP00000005802	ENSACIP00000018875	LSM3 homolog, U6 small nuclear RNA and mRNA degradation associated.	U6 snRNA-associated Sm-like protein LSm8; Plays role in pre-mRNA splicing as component of the U4/U6-U5 tri-snRNP complex that is involved in spliceosome assembly, and as component of the precatalytic spliceosome (spliceosome B complex). The heptameric LSM2-8 complex binds specifically to the 3'-terminal U-tract of U6 snRNA.	0.997
ENSACIP00000006228	ENSACIP00000009979	ENSACIP00000006228	ENSACIP00000009979	LSM14A mRNA processing body assembly factor b.	Smx5.	0.505
ENSACIP00000006228	ENSACIP00000024715	ENSACIP00000006228	ENSACIP00000024715	LSM14A mRNA processing body assembly factor b.	LSM5 homolog, U6 small nuclear RNA and mRNA degradation associated.	0.416
ENSACIP00000006228	LSM1	ENSACIP00000006228	ENSACIP00000025292	LSM14A mRNA processing body assembly factor b.	U6 snRNA-associated Sm-like protein LSm1; Probably involved with other LSm subunits in the general process of degradation of mRNAs.	0.600
ENSACIP00000006228	LSM4	ENSACIP00000006228	ENSACIP00000014068	LSM14A mRNA processing body assembly factor b.	U6 snRNA-associated Sm-like protein LSm4; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	0.552
ENSACIP00000008342	ENSACIP00000005802	ENSACIP00000008342	ENSACIP00000005802	LSM7 homolog, U6 small nuclear RNA and mRNA degradation associated.	LSM3 homolog, U6 small nuclear RNA and mRNA degradation associated.	0.996

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