(55 nodes) Mixed, incl. Protein tyrosine phosphatase activity, and Negative chemotaxis network (Schistosoma haematobium)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	MS3_00626	Bravo_FIGEY domain-containing protein. (915 aa)
	MS3_01494	Neuronal cell adhesion molecule. (400 aa)
	MS3_02924	Tyrosine-protein kinase. (1014 aa)
	MS3_02344	Liprin-beta-1. (1229 aa)
	MS3_02439	FERM, RhoGEF and pleckstrin domain-containing protein 2. (1500 aa)
	MS3_02532	Receptor-type tyrosine-protein phosphatase delta. (1539 aa)
	MS3_03321	Semaphorin-5B. (1328 aa)
	MS3_01586	Protein SCAI. (578 aa)
	MS3_01607	Neurexin-4. (1279 aa)
	MS3_01623	Liprin-alpha-3. (1074 aa)
	MS3_03090	Receptor-type tyrosine-protein phosphatase S. (396 aa)
	MS3_04042	Semaphorin-3E. (1017 aa)
	MS3_02531	Receptor-type tyrosine-protein phosphatase F. (750 aa)
	MS3_04472	Tyrosine-protein kinase transmembrane receptor Ror2. (1249 aa)
	MS3_05263	Fibrocystin-L. (3493 aa)
	MS3_05557	Receptor-type tyrosine-protein phosphatase S. (1738 aa)
	MS3_05611	Fibrocystin-L. (348 aa)
	MS3_06787	CUB domain-containing protein. (281 aa)
	MS3_06955	Neuroglian. (1392 aa)
	MS3_06005	Sema domain-containing protein; Belongs to the semaphorin family. (995 aa)
	MS3_08113	Receptor-type tyrosine-protein phosphatase F. (198 aa)
	MS3_08122	Kazrin. (547 aa)
	MS3_07902	Liprin-alpha-2. (460 aa)
	MS3_09041	Carbonic anhydrase-related protein 10; Belongs to the alpha-carbonic anhydrase family. (109 aa)
	MS3_07405	Ig-like domain-containing protein. (574 aa)
	MS3_09427	Receptor-type tyrosine-protein phosphatase gamma. (295 aa)
	MS3_10095	Receptor-type tyrosine-protein phosphatase delta. (723 aa)
	MS3_08334	Uncharacterized protein. (442 aa)
	MS3_10852	Receptor-type tyrosine-protein phosphatase zeta. (259 aa)
	MS3_10431	Uncharacterized protein. (133 aa)
	MS3_11191	Receptor-type tyrosine-protein phosphatase S. (179 aa)
	MS3_10634	Deleted in malignant brain tumors 1 protein. (363 aa)
	MS3_11106	Cyclin-dependent kinase 5 activator 2. (1012 aa)
	MS3_00367	Semaphorin-5A. (1664 aa)
	MS3_01590	Receptor-type tyrosine-protein phosphatase kappa. (1573 aa)
	MS3_03092	Receptor-type tyrosine-protein phosphatase F. (334 aa)
	MS3_03796	Contactin-3. (1384 aa)
	MS3_04048	Uncharacterized protein. (54 aa)
	MS3_04473	Tyrosine-protein kinase transmembrane receptor Ror. (134 aa)
	MS3_05610	Fibrocystin-L. (477 aa)
	MS3_07900	Liprin-alpha-3. (938 aa)
	MS3_08114	Receptor-type tyrosine-protein phosphatase F. (264 aa)
	MS3_11309	Uncharacterized protein. (204 aa)
	MS3_01489	Neural cell adhesion molecule L1-like protein. (518 aa)
	MS3_01622	Liprin-alpha. (992 aa)
	MS3_02540	Receptor-type tyrosine-protein phosphatase F. (211 aa)
	MS3_03095	Receptor-type tyrosine-protein phosphatase delta. (1561 aa)
	MS3_03416	Uncharacterized protein. (295 aa)
	MS3_03850	Plexin-A1. (2772 aa)
	MS3_04223	Receptor-type tyrosine-protein phosphatase V. (348 aa)
	MS3_07817	Liprin-alpha-2. (743 aa)
	MS3_09178	Immunoglobulin superfamily member 10. (761 aa)
	MS3_09880	Cyclin-dependent kinase 5 activator 2. (1047 aa)
	MS3_10880	Receptor-type tyrosine-protein phosphatase kappa. (365 aa)
	MS3_10897	Tyrosine-protein phosphatase Lar. (232 aa)

Your Current Organism:

Schistosoma haematobium

NCBI taxonomy Id: 6185
Other names: S. haematobium

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
MS3_00367	MS3_02924	A0A095AEL3	A0A094ZJF5	Semaphorin-5A.	Tyrosine-protein kinase.	0.595
MS3_00367	MS3_03850	A0A095AEL3	A0A095C1X0	Semaphorin-5A.	Plexin-A1.	0.931
MS3_00367	MS3_05263	A0A095AEL3	A0A094ZQC8	Semaphorin-5A.	Fibrocystin-L.	0.554
MS3_00367	MS3_05610	A0A095AEL3	A0A095ASC2	Semaphorin-5A.	Fibrocystin-L.	0.554
MS3_00367	MS3_05611	A0A095AEL3	A0A094ZSX6	Semaphorin-5A.	Fibrocystin-L.	0.554
MS3_00626	MS3_01607	A0A094ZDT4	A0A094ZKK4	Bravo_FIGEY domain-containing protein.	Neurexin-4.	0.564
MS3_00626	MS3_09427	A0A094ZDT4	A0A095A0Z8	Bravo_FIGEY domain-containing protein.	Receptor-type tyrosine-protein phosphatase gamma.	0.755
MS3_00626	MS3_10852	A0A094ZDT4	A0A095A4F9	Bravo_FIGEY domain-containing protein.	Receptor-type tyrosine-protein phosphatase zeta.	0.755
MS3_01489	MS3_01494	A0A095BWD7	A0A094ZHG8	Neural cell adhesion molecule L1-like protein.	Neuronal cell adhesion molecule.	0.635
MS3_01489	MS3_01607	A0A095BWD7	A0A094ZKK4	Neural cell adhesion molecule L1-like protein.	Neurexin-4.	0.564
MS3_01489	MS3_09427	A0A095BWD7	A0A095A0Z8	Neural cell adhesion molecule L1-like protein.	Receptor-type tyrosine-protein phosphatase gamma.	0.755
MS3_01489	MS3_10852	A0A095BWD7	A0A095A4F9	Neural cell adhesion molecule L1-like protein.	Receptor-type tyrosine-protein phosphatase zeta.	0.755
MS3_01494	MS3_01489	A0A094ZHG8	A0A095BWD7	Neuronal cell adhesion molecule.	Neural cell adhesion molecule L1-like protein.	0.635
MS3_01494	MS3_01607	A0A094ZHG8	A0A094ZKK4	Neuronal cell adhesion molecule.	Neurexin-4.	0.564
MS3_01494	MS3_09427	A0A094ZHG8	A0A095A0Z8	Neuronal cell adhesion molecule.	Receptor-type tyrosine-protein phosphatase gamma.	0.755
MS3_01494	MS3_10852	A0A094ZHG8	A0A095A4F9	Neuronal cell adhesion molecule.	Receptor-type tyrosine-protein phosphatase zeta.	0.755
MS3_01586	MS3_04223	A0A094ZKJ3	A0A095C2P9	Protein SCAI.	Receptor-type tyrosine-protein phosphatase V.	0.454
MS3_01590	MS3_06955	A0A095AHI9	A0A094ZUM0	Receptor-type tyrosine-protein phosphatase kappa.	Neuroglian.	0.402
MS3_01607	MS3_00626	A0A094ZKK4	A0A094ZDT4	Neurexin-4.	Bravo_FIGEY domain-containing protein.	0.564
MS3_01607	MS3_01489	A0A094ZKK4	A0A095BWD7	Neurexin-4.	Neural cell adhesion molecule L1-like protein.	0.564