(35 nodes) Tyrosine-specific protein phosphatases domain network (Schistosoma haematobium)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	MS3_05455	Tyrosine-protein phosphatase non-receptor type 11. (789 aa)
	MS3_03931	Receptor-type tyrosine-protein phosphatase R. (196 aa)
	MS3_05557	Receptor-type tyrosine-protein phosphatase S. (1738 aa)
	MS3_04718	Dual specificity protein phosphatase 16. (911 aa)
	MS3_07298	annotation not available (595 aa)
	MS3_07617	Dual specificity protein phosphatase 14. (485 aa)
	MS3_07753	Myotubularin-related protein 6. (180 aa)
	MS3_07660	Dual specificity protein phosphatase Mpk3; Belongs to the protein-tyrosine phosphatase family. Non- receptor class dual specificity subfamily. (426 aa)
	MS3_09427	Receptor-type tyrosine-protein phosphatase gamma. (295 aa)
	MS3_10095	Receptor-type tyrosine-protein phosphatase delta. (723 aa)
	MS3_10256	Polynucleotide 5'-triphosphatase; Bifunctional mRNA-capping enzyme exhibiting RNA 5'- triphosphatase activity in the N-terminal part and mRNA guanylyltransferase activity in the C-terminal part. Catalyzes the first two steps of cap formation: by removing the gamma-phosphate from the 5'-triphosphate end of nascent mRNA to yield a diphosphate end, and by transferring the gmp moiety of GTP to the 5'-diphosphate terminus. (670 aa)
	MS3_10852	Receptor-type tyrosine-protein phosphatase zeta. (259 aa)
	MS3_09206	Tyrosine-protein phosphatase non-receptor type 23. (1805 aa)
	MS3_11191	Receptor-type tyrosine-protein phosphatase S. (179 aa)
	MS3_01590	Receptor-type tyrosine-protein phosphatase kappa. (1573 aa)
	MS3_02193	Receptor-type tyrosine-protein phosphatase R. (871 aa)
	MS3_02549	Phosphatidylglycerophosphatase and protein-tyrosine phosphatase 1. (360 aa)
	MS3_06534	Tyrosine-protein phosphatase non-receptor type 9. (891 aa)
	MS3_07844	Tyrosine-protein phosphatase 1. (1526 aa)
	MS3_01254	Protein tyrosine phosphatase type IVA 3. (209 aa)
	MS3_03095	Receptor-type tyrosine-protein phosphatase delta. (1561 aa)
	MS3_04223	Receptor-type tyrosine-protein phosphatase V. (348 aa)
	MS3_06342	Protein-tyrosine-phosphatase MKP1. (201 aa)
	MS3_06729	Dual specificity protein phosphatase 23. (150 aa)
	MS3_07153	Dual specificity protein phosphatase 10. (523 aa)
	MS3_07707	Receptor-type tyrosine-protein phosphatase beta. (979 aa)
	MS3_09347	Dual specificity protein phosphatase 12. (247 aa)
	MS3_10047	Receptor-type tyrosine-protein phosphatase N2. (226 aa)
	MS3_10880	Receptor-type tyrosine-protein phosphatase kappa. (365 aa)
	MS3_03118	Dual specificity protein phosphatase 15. (515 aa)
	MS3_04139	Tyrosine-protein phosphatase non-receptor type 9. (1474 aa)
	MS3_02544	GPI mannosyltransferase 1. (1153 aa)
	MS3_02532	Receptor-type tyrosine-protein phosphatase delta. (1539 aa)
	MS3_02821	RNA/RNP complex-1-interacting phosphatase. (193 aa)
	MS3_01531	Serine/threonine/tyrosine-interacting-like protein 1. (262 aa)

Your Current Organism:

Schistosoma haematobium

NCBI taxonomy Id: 6185
Other names: S. haematobium

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
MS3_02193	MS3_03931	A0A095AIZ7	A0A094ZRG5	Receptor-type tyrosine-protein phosphatase R.	Receptor-type tyrosine-protein phosphatase R.	0.899
MS3_03931	MS3_02193	A0A094ZRG5	A0A095AIZ7	Receptor-type tyrosine-protein phosphatase R.	Receptor-type tyrosine-protein phosphatase R.	0.899
MS3_05455	MS3_09206	A0A094ZQU6	A0A095A543	Tyrosine-protein phosphatase non-receptor type 11.	Tyrosine-protein phosphatase non-receptor type 23.	0.478
MS3_06729	MS3_07153	A0A095C846	A0A095C938	Dual specificity protein phosphatase 23.	Dual specificity protein phosphatase 10.	0.560
MS3_07153	MS3_06729	A0A095C938	A0A095C846	Dual specificity protein phosphatase 10.	Dual specificity protein phosphatase 23.	0.560
MS3_07298	MS3_07753	A0A094ZVI8	A0A094ZWT1	annotation not available	Myotubularin-related protein 6.	0.481
MS3_07753	MS3_07298	A0A094ZWT1	A0A094ZVI8	Myotubularin-related protein 6.	annotation not available	0.481
MS3_09206	MS3_05455	A0A095A543	A0A094ZQU6	Tyrosine-protein phosphatase non-receptor type 23.	Tyrosine-protein phosphatase non-receptor type 11.	0.478
MS3_09427	MS3_10852	A0A095A0Z8	A0A095A4F9	Receptor-type tyrosine-protein phosphatase gamma.	Receptor-type tyrosine-protein phosphatase zeta.	0.685
MS3_10095	MS3_11191	A0A095A2N3	A0A095A641	Receptor-type tyrosine-protein phosphatase delta.	Receptor-type tyrosine-protein phosphatase S.	0.626
MS3_10852	MS3_09427	A0A095A4F9	A0A095A0Z8	Receptor-type tyrosine-protein phosphatase zeta.	Receptor-type tyrosine-protein phosphatase gamma.	0.685
MS3_10852	MS3_10880	A0A095A4F9	A0A095CGZ3	Receptor-type tyrosine-protein phosphatase zeta.	Receptor-type tyrosine-protein phosphatase kappa.	0.414
MS3_10880	MS3_10852	A0A095CGZ3	A0A095A4F9	Receptor-type tyrosine-protein phosphatase kappa.	Receptor-type tyrosine-protein phosphatase zeta.	0.414
MS3_11191	MS3_10095	A0A095A641	A0A095A2N3	Receptor-type tyrosine-protein phosphatase S.	Receptor-type tyrosine-protein phosphatase delta.	0.626