19 items (Schistosoma haematobium) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	MS3_00191	Uncharacterized protein. (234 aa)
	MS3_00473	GTPase HRas. (160 aa)
	MS3_11568	Ncstrn_small domain-containing protein. (135 aa)
	MS3_02062	Arf-GAP with dual PH domain-containing protein 1. (401 aa)
	MS3_02780	Ras-related protein Ral-A. (168 aa)
	MS3_04355	Ras-related protein Ral-A. (147 aa)
	MS3_05983	Growth factor receptor-bound protein 2. (234 aa)
	MS3_07858	Fibronectin type III domain-containing protein 3B. (2026 aa)
	MS3_09691	Ubiquitin-40S ribosomal protein S27a. (152 aa)
	MS3_00203	Pro-neuregulin-2, membrane-bound isoform. (597 aa)
	MS3_04349	Ras-related protein O-RAL. (72 aa)
	MS3_06145	WW domain-containing oxidoreductase. (542 aa)
	MS3_07860	Fibronectin type-III domain-containing protein 3A. (671 aa)
	MS3_08797	Presenilin; Probable subunit of the gamma-secretase complex, an endoprotease complex that catalyzes the intramembrane cleavage of integral membrane proteins such as Notch receptors. Belongs to the peptidase A22A family. (403 aa)
	MS3_09276	Polyubiquitin-C. (228 aa)
	MS3_11096	Nicastrin. (207 aa)
	MS3_10879	Gamma-secretase subunit Aph-1. (284 aa)
	MS3_06732	Ubiquitin-60S ribosomal protein L40. (128 aa)
	MS3_06863	Uncharacterized protein. (274 aa)

Your Current Organism:

Schistosoma haematobium

NCBI taxonomy Id: 6185
Other names: S. haematobium

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
MS3_00191	MS3_05983	A0A094ZE86	A0A094ZTV6	Uncharacterized protein.	Growth factor receptor-bound protein 2.	0.451
MS3_00191	MS3_09276	A0A094ZE86	A0A095B131	Uncharacterized protein.	Polyubiquitin-C.	0.580
MS3_00191	MS3_09691	A0A094ZE86	A0A095A2Y9	Uncharacterized protein.	Ubiquitin-40S ribosomal protein S27a.	0.593
MS3_00203	MS3_05983	A0A095AE27	A0A094ZTV6	Pro-neuregulin-2, membrane-bound isoform.	Growth factor receptor-bound protein 2.	0.451
MS3_00203	MS3_09276	A0A095AE27	A0A095B131	Pro-neuregulin-2, membrane-bound isoform.	Polyubiquitin-C.	0.580
MS3_00203	MS3_09691	A0A095AE27	A0A095A2Y9	Pro-neuregulin-2, membrane-bound isoform.	Ubiquitin-40S ribosomal protein S27a.	0.593
MS3_00473	MS3_05983	A0A094ZF04	A0A094ZTV6	GTPase HRas.	Growth factor receptor-bound protein 2.	0.717
MS3_00473	MS3_06732	A0A094ZF04	A0A095C853	GTPase HRas.	Ubiquitin-60S ribosomal protein L40.	0.478
MS3_00473	MS3_09276	A0A094ZF04	A0A095B131	GTPase HRas.	Polyubiquitin-C.	0.532
MS3_00473	MS3_09691	A0A094ZF04	A0A095A2Y9	GTPase HRas.	Ubiquitin-40S ribosomal protein S27a.	0.490
MS3_02780	MS3_05983	A0A094ZKQ9	A0A094ZTV6	Ras-related protein Ral-A.	Growth factor receptor-bound protein 2.	0.717
MS3_02780	MS3_06732	A0A094ZKQ9	A0A095C853	Ras-related protein Ral-A.	Ubiquitin-60S ribosomal protein L40.	0.478
MS3_02780	MS3_09276	A0A094ZKQ9	A0A095B131	Ras-related protein Ral-A.	Polyubiquitin-C.	0.532
MS3_02780	MS3_09691	A0A094ZKQ9	A0A095A2Y9	Ras-related protein Ral-A.	Ubiquitin-40S ribosomal protein S27a.	0.490
MS3_04349	MS3_05983	A0A095AP63	A0A094ZTV6	Ras-related protein O-RAL.	Growth factor receptor-bound protein 2.	0.717
MS3_04349	MS3_06732	A0A095AP63	A0A095C853	Ras-related protein O-RAL.	Ubiquitin-60S ribosomal protein L40.	0.478
MS3_04349	MS3_09276	A0A095AP63	A0A095B131	Ras-related protein O-RAL.	Polyubiquitin-C.	0.532
MS3_04349	MS3_09691	A0A095AP63	A0A095A2Y9	Ras-related protein O-RAL.	Ubiquitin-40S ribosomal protein S27a.	0.490
MS3_04355	MS3_05983	A0A094ZPK5	A0A094ZTV6	Ras-related protein Ral-A.	Growth factor receptor-bound protein 2.	0.717
MS3_04355	MS3_06732	A0A094ZPK5	A0A095C853	Ras-related protein Ral-A.	Ubiquitin-60S ribosomal protein L40.	0.478