9 items (Schistosoma haematobium) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	MS3_07860	Fibronectin type-III domain-containing protein 3A. (671 aa)
	MS3_07917	Hemicentin-2. (1512 aa)
	MS3_07919	Uncharacterized protein. (152 aa)
	MS3_08840	AP complex subunit sigma; Belongs to the adaptor complexes small subunit family. (152 aa)
	MS3_06863	Uncharacterized protein. (274 aa)
	MS3_00568	AP-2 complex subunit alpha. (842 aa)
	MS3_03027	Hemicentin-1. (3107 aa)
	MS3_07858	Fibronectin type III domain-containing protein 3B. (2026 aa)
	MS3_08208	AP-2 complex subunit mu; Belongs to the adaptor complexes medium subunit family. (443 aa)

Your Current Organism:

Schistosoma haematobium

NCBI taxonomy Id: 6185
Other names: S. haematobium

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
MS3_00568	MS3_08208	A0A094ZDN0	A0A094ZXX7	AP-2 complex subunit alpha.	AP-2 complex subunit mu; Belongs to the adaptor complexes medium subunit family.	0.999
MS3_00568	MS3_08840	A0A094ZDN0	A0A095CCR5	AP-2 complex subunit alpha.	AP complex subunit sigma; Belongs to the adaptor complexes small subunit family.	0.999
MS3_08208	MS3_00568	A0A094ZXX7	A0A094ZDN0	AP-2 complex subunit mu; Belongs to the adaptor complexes medium subunit family.	AP-2 complex subunit alpha.	0.999
MS3_08208	MS3_08840	A0A094ZXX7	A0A095CCR5	AP-2 complex subunit mu; Belongs to the adaptor complexes medium subunit family.	AP complex subunit sigma; Belongs to the adaptor complexes small subunit family.	0.999
MS3_08840	MS3_00568	A0A095CCR5	A0A094ZDN0	AP complex subunit sigma; Belongs to the adaptor complexes small subunit family.	AP-2 complex subunit alpha.	0.999
MS3_08840	MS3_08208	A0A095CCR5	A0A094ZXX7	AP complex subunit sigma; Belongs to the adaptor complexes small subunit family.	AP-2 complex subunit mu; Belongs to the adaptor complexes medium subunit family.	0.999