57 items (Schistosoma haematobium) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	MS3_06671	Exportin-1. (1031 aa)
	MS3_06277	Phosphatidylinositol 3-kinase regulatory subunit alpha. (1192 aa)
	MS3_05538	TATA box-binding protein-like protein 2. (211 aa)
	MS3_05088	TATA box-binding protein-like protein 1. (740 aa)
	MS3_04999	Mediator of RNA polymerase II transcription subunit 1. (2117 aa)
	MS3_04667	Upstream stimulatory factor 1. (1079 aa)
	MS3_02661	TATA-box-binding protein. (271 aa)
	MS3_01606	Uncharacterized protein. (667 aa)
	MS3_10771	DNA-directed RNA polymerases I, II, and III subunit RPABC5. (67 aa)
	MS3_10847	Histone H2B; Belongs to the histone H2B family. (122 aa)
	MS3_10727	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the archaeal rpoM/eukaryotic RPA12/RPB9/RPC11 RNA polymerase family. (135 aa)
	MS3_09723	Histone H2B; Belongs to the histone H2B family. (82 aa)
	MS3_09303	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (1168 aa)
	MS3_07892	Guanine nucleotide-binding protein subunit beta. (340 aa)
	MS3_07079	KN motif and ankyrin repeat domain-containing protein 2. (999 aa)
	MS3_06170	Transcription initiation factor IIA subunit 1. (498 aa)
	MS3_04490	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (1904 aa)
	MS3_04349	Ras-related protein O-RAL. (72 aa)
	MS3_04011	CS domain-containing protein. (210 aa)
	MS3_01594	DNA-directed RNA polymerases I, II, and III subunit RPABC3; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Common component of RNA polymerases I, II and III which synthesize ribosomal RNA precursors, mRNA precursors and many functional non- coding RNAs, and small RNAs, such as 5S rRNA and tRNAs, respectively. (156 aa)
	MS3_09872	Palmitoyltransferase; Belongs to the DHHC palmitoyltransferase family. (438 aa)
	MS3_09906	3-phosphoinositide-dependent protein kinase 1; Belongs to the protein kinase superfamily. (484 aa)
	MS3_08876	Putative histone-arginine methyltransferase 1.3; Belongs to the class I-like SAM-binding methyltransferase superfamily. Protein arginine N-methyltransferase family. (735 aa)
	MS3_08693	Hepatocyte nuclear factor 3-alpha. (797 aa)
	MS3_10561	Serine/threonine-protein phosphatase 5. (487 aa)
	MS3_10066	Dehydrogenase/reductase SDR family member 12. (997 aa)
	MS3_07686	Histone H4; Core component of nucleosome. Nucleosomes wrap and compact DNA into chromatin, limiting DNA accessibility to the cellular machineries which require DNA as a template. Histones thereby play a central role in transcription regulation, DNA repair, DNA replication and chromosomal stability. DNA accessibility is regulated via a complex set of post-translational modifications of histones, also called histone code, and nucleosome remodeling. (151 aa)
	MS3_08593	Guanine nucleotide-binding protein subunit beta-5. (249 aa)
	MS3_08019	Peptidylprolyl isomerase. (384 aa)
	MS3_08222	Striatin. (846 aa)
	MS3_07685	Histone H4; Core component of nucleosome. Nucleosomes wrap and compact DNA into chromatin, limiting DNA accessibility to the cellular machineries which require DNA as a template. Histones thereby play a central role in transcription regulation, DNA repair, DNA replication and chromosomal stability. DNA accessibility is regulated via a complex set of post-translational modifications of histones, also called histone code, and nucleosome remodeling. (103 aa)
	MS3_06510	Transcription initiation factor IIA subunit 2. (144 aa)
	MS3_06422	CREB-binding protein. (1890 aa)
	MS3_05059	Cyclin-dependent kinase 9. (313 aa)
	MS3_05970	Heat shock protein 83. (196 aa)
	MS3_05851	General transcription factor IIF subunit 2. (335 aa)
	MS3_05077	Guanine nucleotide-binding protein subunit beta. (384 aa)
	MS3_04862	CREB-binding protein. (2085 aa)
	MS3_04355	Ras-related protein Ral-A. (147 aa)
	MS3_04036	Cyclin-dependent kinase 9. (275 aa)
	MS3_02572	DNA-directed RNA polymerase II subunit RPB11-b2. (149 aa)
	MS3_02558	Uncharacterized protein. (75 aa)
	MS3_03128	RAC serine/threonine-protein kinase. (607 aa)
	MS3_01847	Exportin-1. (163 aa)
	MS3_02780	Ras-related protein Ral-A. (168 aa)
	MS3_02208	Lysine-specific histone demethylase 1A. (1125 aa)
	MS3_02548	DNA-directed RNA polymerase II subunit RPB7. (157 aa)
	MS3_02381	DNA-directed RNA polymerase II subunit RPB3. (266 aa)
	MS3_01939	DNA-directed RNA polymerase II subunit RPB4. (112 aa)
	MS3_01312	DNA-directed RNA polymerases I, II, and III subunit RPABC4. (97 aa)
	MS3_00029	Striatin. (827 aa)
	MS3_11367	DNA-directed RNA polymerases I, II, and III subunit RPABC2. (104 aa)
	MS3_00473	GTPase HRas. (160 aa)
	MS3_01020	Uncharacterized protein. (170 aa)
	MS3_00822	DNA-directed RNA polymerases I, II, and III subunit RPABC1. (160 aa)
	MS3_11059	Heat shock protein 83. (283 aa)
	MS3_08605	Protein fork head. (685 aa)

Your Current Organism:

Schistosoma haematobium

NCBI taxonomy Id: 6185
Other names: S. haematobium

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
MS3_00029	MS3_08593	A0A094ZGG8	A0A095A083	Striatin.	Guanine nucleotide-binding protein subunit beta-5.	0.487
MS3_00473	MS3_03128	A0A094ZF04	A0A094ZLK2	GTPase HRas.	RAC serine/threonine-protein kinase.	0.450
MS3_00473	MS3_05970	A0A094ZF04	A0A094ZTU7	GTPase HRas.	Heat shock protein 83.	0.414
MS3_00473	MS3_06277	A0A094ZF04	A0A095C742	GTPase HRas.	Phosphatidylinositol 3-kinase regulatory subunit alpha.	0.543
MS3_00473	MS3_09906	A0A094ZF04	A0A095A6V4	GTPase HRas.	3-phosphoinositide-dependent protein kinase 1; Belongs to the protein kinase superfamily.	0.496
MS3_00473	MS3_11059	A0A094ZF04	A0A094ZC43	GTPase HRas.	Heat shock protein 83.	0.414
MS3_00822	MS3_01312	A0A094ZE88	A0A094ZH08	DNA-directed RNA polymerases I, II, and III subunit RPABC1.	DNA-directed RNA polymerases I, II, and III subunit RPABC4.	0.999
MS3_00822	MS3_01594	A0A094ZE88	A0A095AHI1	DNA-directed RNA polymerases I, II, and III subunit RPABC1.	DNA-directed RNA polymerases I, II, and III subunit RPABC3; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Common component of RNA polymerases I, II and III which synthesize ribosomal RNA precursors, mRNA precursors and many functional non- coding RNAs, and small RNAs, such as 5S rRNA and tRNAs, respectively.	0.999
MS3_00822	MS3_01939	A0A094ZE88	A0A094ZH17	DNA-directed RNA polymerases I, II, and III subunit RPABC1.	DNA-directed RNA polymerase II subunit RPB4.	0.999
MS3_00822	MS3_02381	A0A094ZE88	A0A094ZI33	DNA-directed RNA polymerases I, II, and III subunit RPABC1.	DNA-directed RNA polymerase II subunit RPB3.	0.999
MS3_00822	MS3_02548	A0A094ZE88	A0A094ZII3	DNA-directed RNA polymerases I, II, and III subunit RPABC1.	DNA-directed RNA polymerase II subunit RPB7.	0.961
MS3_00822	MS3_02558	A0A094ZE88	A0A094ZMZ9	DNA-directed RNA polymerases I, II, and III subunit RPABC1.	Uncharacterized protein.	0.961
MS3_00822	MS3_02572	A0A094ZE88	A0A094ZN04	DNA-directed RNA polymerases I, II, and III subunit RPABC1.	DNA-directed RNA polymerase II subunit RPB11-b2.	0.999
MS3_00822	MS3_02661	A0A094ZE88	A0A095BZ37	DNA-directed RNA polymerases I, II, and III subunit RPABC1.	TATA-box-binding protein.	0.981
MS3_00822	MS3_04490	A0A094ZE88	A0A095APJ2	DNA-directed RNA polymerases I, II, and III subunit RPABC1.	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.999
MS3_00822	MS3_04999	A0A094ZE88	A0A095C4D0	DNA-directed RNA polymerases I, II, and III subunit RPABC1.	Mediator of RNA polymerase II transcription subunit 1.	0.981
MS3_00822	MS3_05088	A0A094ZE88	A0A095C4P3	DNA-directed RNA polymerases I, II, and III subunit RPABC1.	TATA box-binding protein-like protein 1.	0.913
MS3_00822	MS3_05538	A0A094ZE88	A0A095C5L3	DNA-directed RNA polymerases I, II, and III subunit RPABC1.	TATA box-binding protein-like protein 2.	0.913
MS3_00822	MS3_05851	A0A094ZE88	A0A094ZRW6	DNA-directed RNA polymerases I, II, and III subunit RPABC1.	General transcription factor IIF subunit 2.	0.997
MS3_00822	MS3_06170	A0A094ZE88	A0A095ATN4	DNA-directed RNA polymerases I, II, and III subunit RPABC1.	Transcription initiation factor IIA subunit 1.	0.946