16 items (Opisthorchis viverrini) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	T265_16027	Uncharacterized protein. (186 aa)
	T265_11066	Anion exchange protein. (1421 aa)
	T265_14956	Uncharacterized protein. (438 aa)
	T265_08691	HD domain-containing protein. (579 aa)
	T265_09795	HCO3_cotransp domain-containing protein. (297 aa)
	T265_07505	Uncharacterized protein. (603 aa)
	T265_14957	Uncharacterized protein. (234 aa)
	T265_06236	Uncharacterized protein. (82 aa)
	T265_07211	LisH domain-containing protein. (1655 aa)
	T265_06240	VWFA domain-containing protein. (487 aa)
	T265_06235	C2 domain-containing protein. (86 aa)
	T265_03871	Ribonuclease; Endonuclease that specifically degrades the RNA of RNA-DNA hybrids; Belongs to the RNase HII family. (356 aa)
	T265_10125	Copine domain-containing protein. (314 aa)
	T265_09796	Uncharacterized protein. (71 aa)
	T265_00053	Cytochrome b5-like Heme/Steroid binding domain protein; Belongs to the cytochrome b5 family. (210 aa)
	T265_07983	Uncharacterized protein. (206 aa)

Your Current Organism:

Opisthorchis viverrini

NCBI taxonomy Id: 6198
Other names: O. viverrini, Southeast Asian liver fluke

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
T265_00053	T265_11066	A0A075A765	A0A074YZZ7	Cytochrome b5-like Heme/Steroid binding domain protein; Belongs to the cytochrome b5 family.	Anion exchange protein.	0.575
T265_03871	T265_06235	A0A074ZUG9	A0A074ZT06	Ribonuclease; Endonuclease that specifically degrades the RNA of RNA-DNA hybrids; Belongs to the RNase HII family.	C2 domain-containing protein.	0.515
T265_03871	T265_06236	A0A074ZUG9	A0A074ZGV8	Ribonuclease; Endonuclease that specifically degrades the RNA of RNA-DNA hybrids; Belongs to the RNase HII family.	Uncharacterized protein.	0.515
T265_03871	T265_06240	A0A074ZUG9	A0A074ZL52	Ribonuclease; Endonuclease that specifically degrades the RNA of RNA-DNA hybrids; Belongs to the RNase HII family.	VWFA domain-containing protein.	0.515
T265_03871	T265_07505	A0A074ZUG9	A0A074ZCB2	Ribonuclease; Endonuclease that specifically degrades the RNA of RNA-DNA hybrids; Belongs to the RNase HII family.	Uncharacterized protein.	0.998
T265_03871	T265_07983	A0A074ZUG9	A0A075A9X1	Ribonuclease; Endonuclease that specifically degrades the RNA of RNA-DNA hybrids; Belongs to the RNase HII family.	Uncharacterized protein.	0.515
T265_03871	T265_08691	A0A074ZUG9	A0A074Z880	Ribonuclease; Endonuclease that specifically degrades the RNA of RNA-DNA hybrids; Belongs to the RNase HII family.	HD domain-containing protein.	0.610
T265_03871	T265_10125	A0A074ZUG9	A0A075A2H8	Ribonuclease; Endonuclease that specifically degrades the RNA of RNA-DNA hybrids; Belongs to the RNase HII family.	Copine domain-containing protein.	0.515
T265_06235	T265_03871	A0A074ZT06	A0A074ZUG9	C2 domain-containing protein.	Ribonuclease; Endonuclease that specifically degrades the RNA of RNA-DNA hybrids; Belongs to the RNase HII family.	0.515
T265_06235	T265_06240	A0A074ZT06	A0A074ZL52	C2 domain-containing protein.	VWFA domain-containing protein.	0.620
T265_06235	T265_07505	A0A074ZT06	A0A074ZCB2	C2 domain-containing protein.	Uncharacterized protein.	0.585
T265_06235	T265_10125	A0A074ZT06	A0A075A2H8	C2 domain-containing protein.	Copine domain-containing protein.	0.439
T265_06236	T265_03871	A0A074ZGV8	A0A074ZUG9	Uncharacterized protein.	Ribonuclease; Endonuclease that specifically degrades the RNA of RNA-DNA hybrids; Belongs to the RNase HII family.	0.515
T265_06236	T265_07505	A0A074ZGV8	A0A074ZCB2	Uncharacterized protein.	Uncharacterized protein.	0.585
T265_06240	T265_03871	A0A074ZL52	A0A074ZUG9	VWFA domain-containing protein.	Ribonuclease; Endonuclease that specifically degrades the RNA of RNA-DNA hybrids; Belongs to the RNase HII family.	0.515
T265_06240	T265_06235	A0A074ZL52	A0A074ZT06	VWFA domain-containing protein.	C2 domain-containing protein.	0.620
T265_06240	T265_07505	A0A074ZL52	A0A074ZCB2	VWFA domain-containing protein.	Uncharacterized protein.	0.585
T265_07211	T265_07505	A0A074ZHU6	A0A074ZCB2	LisH domain-containing protein.	Uncharacterized protein.	0.457
T265_07211	T265_08691	A0A074ZHU6	A0A074Z880	LisH domain-containing protein.	HD domain-containing protein.	0.933
T265_07505	T265_03871	A0A074ZCB2	A0A074ZUG9	Uncharacterized protein.	Ribonuclease; Endonuclease that specifically degrades the RNA of RNA-DNA hybrids; Belongs to the RNase HII family.	0.998