7 items (Opisthorchis viverrini) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	T265_11297	Uncharacterized protein. (332 aa)
	T265_13708	Aa_trans domain-containing protein. (620 aa)
	T265_03756	Uncharacterized protein. (282 aa)
	T265_08500	Uncharacterized protein. (418 aa)
	T265_05450	Uncharacterized protein. (571 aa)
	T265_04975	Uncharacterized protein. (339 aa)
	T265_02419	WD_REPEATS_REGION domain-containing protein. (2272 aa)

Your Current Organism:

Opisthorchis viverrini

NCBI taxonomy Id: 6198
Other names: O. viverrini, Southeast Asian liver fluke

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

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MFA: multi-fasta format - containing the aminoacid sequences in the network

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
T265_02419	T265_03756	A0A075AIC0	A0A075A2B6	WD_REPEATS_REGION domain-containing protein.	Uncharacterized protein.	0.994
T265_02419	T265_04975	A0A075AIC0	A0A075AFW9	WD_REPEATS_REGION domain-containing protein.	Uncharacterized protein.	0.995
T265_02419	T265_05450	A0A075AIC0	A0A075AF91	WD_REPEATS_REGION domain-containing protein.	Uncharacterized protein.	0.995
T265_02419	T265_08500	A0A075AIC0	A0A075A850	WD_REPEATS_REGION domain-containing protein.	Uncharacterized protein.	0.989
T265_02419	T265_11297	A0A075AIC0	A0A074YZ55	WD_REPEATS_REGION domain-containing protein.	Uncharacterized protein.	0.998
T265_02419	T265_13708	A0A075AIC0	A0A074ZKG5	WD_REPEATS_REGION domain-containing protein.	Aa_trans domain-containing protein.	0.687
T265_03756	T265_02419	A0A075A2B6	A0A075AIC0	Uncharacterized protein.	WD_REPEATS_REGION domain-containing protein.	0.994
T265_03756	T265_04975	A0A075A2B6	A0A075AFW9	Uncharacterized protein.	Uncharacterized protein.	0.998
T265_03756	T265_05450	A0A075A2B6	A0A075AF91	Uncharacterized protein.	Uncharacterized protein.	0.998
T265_03756	T265_08500	A0A075A2B6	A0A075A850	Uncharacterized protein.	Uncharacterized protein.	0.801
T265_03756	T265_11297	A0A075A2B6	A0A074YZ55	Uncharacterized protein.	Uncharacterized protein.	0.947
T265_03756	T265_13708	A0A075A2B6	A0A074ZKG5	Uncharacterized protein.	Aa_trans domain-containing protein.	0.992
T265_04975	T265_02419	A0A075AFW9	A0A075AIC0	Uncharacterized protein.	WD_REPEATS_REGION domain-containing protein.	0.995
T265_04975	T265_03756	A0A075AFW9	A0A075A2B6	Uncharacterized protein.	Uncharacterized protein.	0.998
T265_04975	T265_05450	A0A075AFW9	A0A075AF91	Uncharacterized protein.	Uncharacterized protein.	0.999
T265_04975	T265_08500	A0A075AFW9	A0A075A850	Uncharacterized protein.	Uncharacterized protein.	0.825
T265_04975	T265_11297	A0A075AFW9	A0A074YZ55	Uncharacterized protein.	Uncharacterized protein.	0.963
T265_04975	T265_13708	A0A075AFW9	A0A074ZKG5	Uncharacterized protein.	Aa_trans domain-containing protein.	0.995
T265_05450	T265_02419	A0A075AF91	A0A075AIC0	Uncharacterized protein.	WD_REPEATS_REGION domain-containing protein.	0.995
T265_05450	T265_03756	A0A075AF91	A0A075A2B6	Uncharacterized protein.	Uncharacterized protein.	0.998