(6 nodes) Mixed, incl. Shelterin complex, and Doublecortin network (Opisthorchis viverrini)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	T265_15623	Telo_bind domain-containing protein. (725 aa)
	T265_15873	Telo_bind domain-containing protein. (110 aa)
	T265_14149	Uncharacterized protein. (538 aa)
	T265_06827	Uncharacterized protein. (848 aa)
	T265_06826	Uncharacterized protein. (152 aa)
	T265_06825	Uncharacterized protein. (208 aa)

Your Current Organism:

Opisthorchis viverrini

NCBI taxonomy Id: 6198
Other names: O. viverrini, Southeast Asian liver fluke

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
T265_06825	T265_15623	A0A075AD20	A0A074YWQ5	Uncharacterized protein.	Telo_bind domain-containing protein.	0.516
T265_06825	T265_15873	A0A075AD20	A0A074YZS7	Uncharacterized protein.	Telo_bind domain-containing protein.	0.516
T265_06826	T265_15623	A0A074ZR31	A0A074YWQ5	Uncharacterized protein.	Telo_bind domain-containing protein.	0.516
T265_06826	T265_15873	A0A074ZR31	A0A074YZS7	Uncharacterized protein.	Telo_bind domain-containing protein.	0.516
T265_06827	T265_14149	A0A074ZJ54	A0A074ZES4	Uncharacterized protein.	Uncharacterized protein.	0.587
T265_06827	T265_15623	A0A074ZJ54	A0A074YWQ5	Uncharacterized protein.	Telo_bind domain-containing protein.	0.516
T265_06827	T265_15873	A0A074ZJ54	A0A074YZS7	Uncharacterized protein.	Telo_bind domain-containing protein.	0.516
T265_14149	T265_06827	A0A074ZES4	A0A074ZJ54	Uncharacterized protein.	Uncharacterized protein.	0.587
T265_14149	T265_15623	A0A074ZES4	A0A074YWQ5	Uncharacterized protein.	Telo_bind domain-containing protein.	0.516
T265_14149	T265_15873	A0A074ZES4	A0A074YZS7	Uncharacterized protein.	Telo_bind domain-containing protein.	0.516
T265_15623	T265_06825	A0A074YWQ5	A0A075AD20	Telo_bind domain-containing protein.	Uncharacterized protein.	0.516
T265_15623	T265_06826	A0A074YWQ5	A0A074ZR31	Telo_bind domain-containing protein.	Uncharacterized protein.	0.516
T265_15623	T265_06827	A0A074YWQ5	A0A074ZJ54	Telo_bind domain-containing protein.	Uncharacterized protein.	0.516
T265_15623	T265_14149	A0A074YWQ5	A0A074ZES4	Telo_bind domain-containing protein.	Uncharacterized protein.	0.516
T265_15873	T265_06825	A0A074YZS7	A0A075AD20	Telo_bind domain-containing protein.	Uncharacterized protein.	0.516
T265_15873	T265_06826	A0A074YZS7	A0A074ZR31	Telo_bind domain-containing protein.	Uncharacterized protein.	0.516
T265_15873	T265_06827	A0A074YZS7	A0A074ZJ54	Telo_bind domain-containing protein.	Uncharacterized protein.	0.516
T265_15873	T265_14149	A0A074YZS7	A0A074ZES4	Telo_bind domain-containing protein.	Uncharacterized protein.	0.516