15 items (Opisthorchis viverrini) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	T265_10918	acidPPc domain-containing protein. (363 aa)
	T265_08820	PNPLA domain-containing protein. (650 aa)
	T265_08222	acidPPc domain-containing protein. (262 aa)
	T265_08024	Uncharacterized protein. (1286 aa)
	T265_06264	acidPPc domain-containing protein. (263 aa)
	T265_13771	Uncharacterized protein; Belongs to the CDP-alcohol phosphatidyltransferase class-I family. (399 aa)
	T265_05573	Uncharacterized protein; Belongs to the CDP-alcohol phosphatidyltransferase class-I family. (411 aa)
	T265_05264	Uncharacterized protein. (217 aa)
	T265_13894	Diacylglycerol kinase. (1360 aa)
	T265_05014	Phospholipase. (1240 aa)
	T265_01519	Diacylglycerol kinase. (1321 aa)
	T265_01757	LNS2 domain-containing protein. (407 aa)
	T265_00228	O-acyltransferase. (553 aa)
	T265_07456	Uncharacterized protein. (458 aa)
	T265_14270	Diacylglycerol kinase. (887 aa)

Your Current Organism:

Opisthorchis viverrini

NCBI taxonomy Id: 6198
Other names: O. viverrini, Southeast Asian liver fluke

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
T265_00228	T265_01519	A0A075A2U9	A0A074ZYC7	O-acyltransferase.	Diacylglycerol kinase.	0.916
T265_00228	T265_01757	A0A075A2U9	A0A075A1M5	O-acyltransferase.	LNS2 domain-containing protein.	0.945
T265_00228	T265_05264	A0A075A2U9	A0A074ZL39	O-acyltransferase.	Uncharacterized protein.	0.943
T265_00228	T265_06264	A0A075A2U9	A0A074ZGR3	O-acyltransferase.	acidPPc domain-containing protein.	0.943
T265_00228	T265_08024	A0A075A2U9	A0A074ZAH7	O-acyltransferase.	Uncharacterized protein.	0.945
T265_00228	T265_08222	A0A075A2U9	A0A074ZA58	O-acyltransferase.	acidPPc domain-containing protein.	0.943
T265_00228	T265_08820	A0A075A2U9	A0A074Z822	O-acyltransferase.	PNPLA domain-containing protein.	0.922
T265_00228	T265_10918	A0A075A2U9	A0A074Z0I8	O-acyltransferase.	acidPPc domain-containing protein.	0.943
T265_00228	T265_13894	A0A075A2U9	A0A074ZMG4	O-acyltransferase.	Diacylglycerol kinase.	0.916
T265_00228	T265_14270	A0A075A2U9	A0A075ABV9	O-acyltransferase.	Diacylglycerol kinase.	0.900
T265_01519	T265_00228	A0A074ZYC7	A0A075A2U9	Diacylglycerol kinase.	O-acyltransferase.	0.916
T265_01519	T265_01757	A0A074ZYC7	A0A075A1M5	Diacylglycerol kinase.	LNS2 domain-containing protein.	0.912
T265_01519	T265_05014	A0A074ZYC7	A0A074ZXN8	Diacylglycerol kinase.	Phospholipase.	0.923
T265_01519	T265_05264	A0A074ZYC7	A0A074ZL39	Diacylglycerol kinase.	Uncharacterized protein.	0.913
T265_01519	T265_05573	A0A074ZYC7	A0A074ZK22	Diacylglycerol kinase.	Uncharacterized protein; Belongs to the CDP-alcohol phosphatidyltransferase class-I family.	0.905
T265_01519	T265_06264	A0A074ZYC7	A0A074ZGR3	Diacylglycerol kinase.	acidPPc domain-containing protein.	0.913
T265_01519	T265_07456	A0A074ZYC7	A0A075ABH5	Diacylglycerol kinase.	Uncharacterized protein.	0.911
T265_01519	T265_08024	A0A074ZYC7	A0A074ZAH7	Diacylglycerol kinase.	Uncharacterized protein.	0.912
T265_01519	T265_08222	A0A074ZYC7	A0A074ZA58	Diacylglycerol kinase.	acidPPc domain-containing protein.	0.913
T265_01519	T265_08820	A0A074ZYC7	A0A074Z822	Diacylglycerol kinase.	PNPLA domain-containing protein.	0.900