(59 nodes) Mixed, incl. Heparan sulfate/heparin (HS-GAG) metabolism, and ECM-receptor interaction network (Opisthorchis viverrini)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	T265_16202	Glyco_transf_64 domain-containing protein. (60 aa)
	T265_15620	Integrin_alpha2 domain-containing protein. (580 aa)
	T265_15584	Uncharacterized protein. (2733 aa)
	T265_10411	Uncharacterized protein. (327 aa)
	T265_10413	Integrin_alpha2 domain-containing protein; Belongs to the integrin alpha chain family. (1021 aa)
	T265_15116	Uncharacterized protein. (1081 aa)
	T265_16352	Uncharacterized protein. (79 aa)
	T265_12351	Uncharacterized protein. (89 aa)
	T265_14896	Uncharacterized protein. (305 aa)
	T265_09315	Uncharacterized protein. (893 aa)
	T265_11551	Uncharacterized protein. (1627 aa)
	T265_08242	Uncharacterized protein. (654 aa)
	T265_15345	Uncharacterized protein. (1513 aa)
	T265_09208	Ig-like domain-containing protein. (2256 aa)
	T265_07838	SPARC_Ca_bdg domain-containing protein. (258 aa)
	T265_15254	Uncharacterized protein. (98 aa)
	T265_10681	Uncharacterized protein. (3584 aa)
	T265_08799	Uncharacterized protein. (103 aa)
	T265_10612	Galactosylgalactosylxylosylprotein 3-beta-glucuronosyltransferase; Belongs to the glycosyltransferase 43 family. (289 aa)
	T265_14276	Uncharacterized protein; Belongs to the glypican family. (610 aa)
	T265_14574	Uncharacterized protein. (561 aa)
	T265_10155	Uncharacterized protein. (330 aa)
	T265_14975	Uncharacterized protein. (1003 aa)
	T265_06508	Uncharacterized protein; Belongs to the glypican family. (1099 aa)
	T265_06473	Glyco_transf_64 domain-containing protein. (752 aa)
	T265_06392	Uncharacterized protein. (408 aa)
	T265_05866	Uncharacterized protein; Belongs to the glycosyltransferase 47 family. (837 aa)
	T265_13959	Uncharacterized protein. (890 aa)
	T265_04204	Uncharacterized protein; Belongs to the glycosyl hydrolase 5 (cellulase A) family. (525 aa)
	T265_13317	LAM_G_DOMAIN domain-containing protein. (227 aa)
	T265_06313	Uncharacterized protein. (1113 aa)
	T265_13449	Uncharacterized protein; Belongs to the glycosyl hydrolase 5 (cellulase A) family. (471 aa)
	T265_03761	Heparan-sulfate 6-O-sulfotransferase; 6-O-sulfation enzyme which catalyzes the transfer of sulfate from 3'-phosphoadenosine 5'-phosphosulfate (PAPS) to position 6 of the N-sulfoglucosamine residue (GlcNS) of heparan sulfate. (594 aa)
	T265_05649	Uncharacterized protein. (4489 aa)
	T265_01999	Integrin_alpha2 domain-containing protein; Belongs to the integrin alpha chain family. (1229 aa)
	T265_13609	Glyco_transf_64 domain-containing protein. (147 aa)
	T265_04732	Thyroglobulin type-1 domain-containing protein. (422 aa)
	T265_12678	Uncharacterized protein. (1022 aa)
	T265_02233	LLGL domain-containing protein. (1387 aa)
	T265_01167	Uncharacterized protein. (296 aa)
	T265_04042	Glyco_transf_64 domain-containing protein. (113 aa)
	T265_03975	Uncharacterized protein. (1377 aa)
	T265_01685	Uncharacterized protein. (1725 aa)
	T265_00466	Uncharacterized protein. (6760 aa)
	T265_09435	Integrase catalytic domain-containing protein. (3159 aa)
	T265_08461	NTR domain-containing protein. (372 aa)
	T265_01905	Uncharacterized protein. (739 aa)
	T265_08369	Uncharacterized protein. (515 aa)
	T265_12703	EGF-like domain-containing protein. (601 aa)
	T265_07036	Uncharacterized protein; Belongs to the glycosyltransferase 47 family. (923 aa)
	T265_12484	Uncharacterized protein. (1541 aa)
	T265_05932	Uncharacterized protein; Belongs to the glycosyltransferase 47 family. (508 aa)
	T265_05535	Uncharacterized protein. (1813 aa)
	T265_05496	Uncharacterized protein. (814 aa)
	T265_03712	Uncharacterized protein; Belongs to the glypican family. (1063 aa)
	T265_02959	Integrin_alpha2 domain-containing protein. (1989 aa)
	T265_12873	Uncharacterized protein. (361 aa)
	T265_01774	Uncharacterized protein. (918 aa)
	T265_00338	Uncharacterized protein. (177 aa)

Your Current Organism:

Opisthorchis viverrini

NCBI taxonomy Id: 6198
Other names: O. viverrini, Southeast Asian liver fluke

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
T265_00338	T265_00466	A0A075AJS5	A0A075A363	Uncharacterized protein.	Uncharacterized protein.	0.415
T265_00338	T265_04204	A0A075AJS5	A0A074ZPV0	Uncharacterized protein.	Uncharacterized protein; Belongs to the glycosyl hydrolase 5 (cellulase A) family.	0.415
T265_00338	T265_05496	A0A075AJS5	A0A075AF83	Uncharacterized protein.	Uncharacterized protein.	0.415
T265_00338	T265_05535	A0A075AJS5	A0A075AF72	Uncharacterized protein.	Uncharacterized protein.	0.415
T265_00338	T265_08242	A0A075AJS5	A0A074Z9T4	Uncharacterized protein.	Uncharacterized protein.	0.411
T265_00338	T265_12351	A0A075AJS5	A0A074Z4H8	Uncharacterized protein.	Uncharacterized protein.	0.415
T265_00338	T265_12484	A0A075AJS5	A0A075AD58	Uncharacterized protein.	Uncharacterized protein.	0.415
T265_00338	T265_12703	A0A075AJS5	A0A075AAT8	Uncharacterized protein.	EGF-like domain-containing protein.	0.411
T265_00338	T265_12873	A0A075AJS5	A0A075AIQ1	Uncharacterized protein.	Uncharacterized protein.	0.584
T265_00338	T265_13317	A0A075AJS5	A0A074ZRH2	Uncharacterized protein.	LAM_G_DOMAIN domain-containing protein.	0.415
T265_00338	T265_13449	A0A075AJS5	A0A074ZTF6	Uncharacterized protein.	Uncharacterized protein; Belongs to the glycosyl hydrolase 5 (cellulase A) family.	0.415
T265_00338	T265_15584	A0A075AJS5	A0A074Z1E7	Uncharacterized protein.	Uncharacterized protein.	0.411
T265_00338	T265_16352	A0A075AJS5	A0A074Z3V5	Uncharacterized protein.	Uncharacterized protein.	0.415
T265_00466	T265_00338	A0A075A363	A0A075AJS5	Uncharacterized protein.	Uncharacterized protein.	0.415
T265_00466	T265_01167	A0A075A363	A0A075A0J3	Uncharacterized protein.	Uncharacterized protein.	0.415
T265_00466	T265_01685	A0A075A363	A0A075A1Z1	Uncharacterized protein.	Uncharacterized protein.	0.415
T265_00466	T265_08799	A0A075A363	A0A074ZCG1	Uncharacterized protein.	Uncharacterized protein.	0.415
T265_00466	T265_09208	A0A075A363	A0A074ZB34	Uncharacterized protein.	Ig-like domain-containing protein.	0.677
T265_00466	T265_13959	A0A075A363	A0A074ZLI7	Uncharacterized protein.	Uncharacterized protein.	0.677
T265_01167	T265_00466	A0A075A0J3	A0A075A363	Uncharacterized protein.	Uncharacterized protein.	0.415