(16 nodes) Transcription factor TFIID complex, and TATA-box binding protein network (Opisthorchis viverrini)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	T265_10741	WD_REPEATS_REGION domain-containing protein. (727 aa)
	T265_10596	Uncharacterized protein. (429 aa)
	T265_10984	Uncharacterized protein. (2803 aa)
	T265_10740	Uncharacterized protein. (76 aa)
	T265_10196	Uncharacterized protein. (185 aa)
	T265_14113	Reverse transcriptase domain-containing protein. (1401 aa)
	T265_05533	Uncharacterized protein. (766 aa)
	T265_04366	TAFH domain-containing protein. (725 aa)
	T265_13439	Uncharacterized protein. (883 aa)
	T265_01621	TAFII55_N domain-containing protein. (462 aa)
	T265_10220	Uncharacterized protein. (840 aa)
	T265_01404	TAFII28 domain-containing protein. (277 aa)
	T265_12508	Uncharacterized protein. (443 aa)
	T265_08087	Uncharacterized protein. (167 aa)
	T265_14412	TFIID_20kDa domain-containing protein. (473 aa)
	T265_05686	Uncharacterized protein. (214 aa)

Your Current Organism:

Opisthorchis viverrini

NCBI taxonomy Id: 6198
Other names: O. viverrini, Southeast Asian liver fluke

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
T265_01404	T265_01621	A0A075A2Q0	A0A074ZYR4	TAFII28 domain-containing protein.	TAFII55_N domain-containing protein.	0.995
T265_01404	T265_04366	A0A075A2Q0	A0A074ZST7	TAFII28 domain-containing protein.	TAFH domain-containing protein.	0.999
T265_01404	T265_05533	A0A075A2Q0	A0A074ZJB6	TAFII28 domain-containing protein.	Uncharacterized protein.	0.999
T265_01404	T265_05686	A0A075A2Q0	A0A075AEZ5	TAFII28 domain-containing protein.	Uncharacterized protein.	0.903
T265_01404	T265_08087	A0A075A2Q0	A0A075A9L9	TAFII28 domain-containing protein.	Uncharacterized protein.	0.969
T265_01404	T265_10196	A0A075A2Q0	A0A074Z7E9	TAFII28 domain-containing protein.	Uncharacterized protein.	0.969
T265_01404	T265_10220	A0A075A2Q0	A0A075A228	TAFII28 domain-containing protein.	Uncharacterized protein.	0.999
T265_01404	T265_10596	A0A075A2Q0	A0A074Z1V3	TAFII28 domain-containing protein.	Uncharacterized protein.	0.999
T265_01404	T265_10740	A0A075A2Q0	A0A074Z5H9	TAFII28 domain-containing protein.	Uncharacterized protein.	0.968
T265_01404	T265_10741	A0A075A2Q0	A0A074Z1D7	TAFII28 domain-containing protein.	WD_REPEATS_REGION domain-containing protein.	0.968
T265_01404	T265_10984	A0A075A2Q0	A0A074Z4N0	TAFII28 domain-containing protein.	Uncharacterized protein.	0.999
T265_01404	T265_12508	A0A075A2Q0	A0A075A682	TAFII28 domain-containing protein.	Uncharacterized protein.	0.906
T265_01404	T265_13439	A0A075A2Q0	A0A074ZTQ0	TAFII28 domain-containing protein.	Uncharacterized protein.	0.912
T265_01404	T265_14113	A0A075A2Q0	A0A074ZFB4	TAFII28 domain-containing protein.	Reverse transcriptase domain-containing protein.	0.999
T265_01404	T265_14412	A0A075A2Q0	A0A075AA86	TAFII28 domain-containing protein.	TFIID_20kDa domain-containing protein.	0.999
T265_01621	T265_01404	A0A074ZYR4	A0A075A2Q0	TAFII55_N domain-containing protein.	TAFII28 domain-containing protein.	0.995
T265_01621	T265_04366	A0A074ZYR4	A0A074ZST7	TAFII55_N domain-containing protein.	TAFH domain-containing protein.	0.999
T265_01621	T265_05533	A0A074ZYR4	A0A074ZJB6	TAFII55_N domain-containing protein.	Uncharacterized protein.	0.999
T265_01621	T265_05686	A0A074ZYR4	A0A075AEZ5	TAFII55_N domain-containing protein.	Uncharacterized protein.	0.907
T265_01621	T265_08087	A0A074ZYR4	A0A075A9L9	TAFII55_N domain-containing protein.	Uncharacterized protein.	0.967