5 items (Opisthorchis viverrini) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	T265_06068	Uncharacterized protein. (475 aa)
	T265_11951	ABC transmembrane type-1 domain-containing protein. (533 aa)
	T265_15559	Uncharacterized protein. (1071 aa)
	T265_12779	Uncharacterized protein. (687 aa)
	T265_13996	ABC transmembrane type-1 domain-containing protein. (480 aa)

Your Current Organism:

Opisthorchis viverrini

NCBI taxonomy Id: 6198
Other names: O. viverrini, Southeast Asian liver fluke

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
T265_06068	T265_11951	A0A074ZIA6	A0A074ZVL7	Uncharacterized protein.	ABC transmembrane type-1 domain-containing protein.	0.704
T265_06068	T265_12779	A0A074ZIA6	A0A074ZZ34	Uncharacterized protein.	Uncharacterized protein.	0.408
T265_06068	T265_13996	A0A074ZIA6	A0A075AE29	Uncharacterized protein.	ABC transmembrane type-1 domain-containing protein.	0.910
T265_11951	T265_06068	A0A074ZVL7	A0A074ZIA6	ABC transmembrane type-1 domain-containing protein.	Uncharacterized protein.	0.704
T265_11951	T265_15559	A0A074ZVL7	A0A074ZW16	ABC transmembrane type-1 domain-containing protein.	Uncharacterized protein.	0.876
T265_12779	T265_06068	A0A074ZZ34	A0A074ZIA6	Uncharacterized protein.	Uncharacterized protein.	0.408
T265_12779	T265_13996	A0A074ZZ34	A0A075AE29	Uncharacterized protein.	ABC transmembrane type-1 domain-containing protein.	0.419
T265_13996	T265_06068	A0A075AE29	A0A074ZIA6	ABC transmembrane type-1 domain-containing protein.	Uncharacterized protein.	0.910
T265_13996	T265_12779	A0A075AE29	A0A074ZZ34	ABC transmembrane type-1 domain-containing protein.	Uncharacterized protein.	0.419
T265_15559	T265_11951	A0A074ZW16	A0A074ZVL7	Uncharacterized protein.	ABC transmembrane type-1 domain-containing protein.	0.876