(5 nodes) ABC-2 type transporter, and Type 1 protein exporter network (Opisthorchis viverrini)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	T265_16170	Uncharacterized protein. (153 aa)
	T265_16217	Uncharacterized protein. (71 aa)
	T265_09965	ABC transporter domain-containing protein. (786 aa)
	T265_00170	Uncharacterized protein. (1171 aa)
	T265_08932	ABC transporter domain-containing protein. (960 aa)

Your Current Organism:

Opisthorchis viverrini

NCBI taxonomy Id: 6198
Other names: O. viverrini, Southeast Asian liver fluke

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
T265_08932	T265_09965	A0A075A6R3	A0A074Z404	ABC transporter domain-containing protein.	ABC transporter domain-containing protein.	0.908
T265_08932	T265_16170	A0A075A6R3	A0A074YTZ8	ABC transporter domain-containing protein.	Uncharacterized protein.	0.439
T265_08932	T265_16217	A0A075A6R3	A0A074YU25	ABC transporter domain-containing protein.	Uncharacterized protein.	0.439
T265_09965	T265_08932	A0A074Z404	A0A075A6R3	ABC transporter domain-containing protein.	ABC transporter domain-containing protein.	0.908
T265_16170	T265_08932	A0A074YTZ8	A0A075A6R3	Uncharacterized protein.	ABC transporter domain-containing protein.	0.439
T265_16217	T265_08932	A0A074YU25	A0A075A6R3	Uncharacterized protein.	ABC transporter domain-containing protein.	0.439