(146 nodes) Mixed, incl. Ribonuclease H superfamily, and Reverse transcriptase/Diguanylate cyclase domain network (Opisthorchis viverrini)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	T265_16310	Uncharacterized protein. (95 aa)
	T265_16145	Parvo_NS1 domain-containing protein. (198 aa)
	T265_15624	Integrase catalytic domain-containing protein. (311 aa)
	T265_11777	Reverse transcriptase domain-containing protein. (467 aa)
	T265_11853	Integrase catalytic domain-containing protein. (150 aa)
	T265_11612	Uncharacterized protein. (180 aa)
	T265_11450	Uncharacterized protein. (151 aa)
	T265_12232	Uncharacterized protein. (123 aa)
	T265_11219	Uncharacterized protein; Belongs to the mitochondrial carrier (TC 2.A.29) family. (290 aa)
	T265_11123	LITAF domain-containing protein. (94 aa)
	T265_12081	Uncharacterized protein. (307 aa)
	T265_15274	LITAF domain-containing protein. (159 aa)
	T265_10919	Integrase catalytic domain-containing protein. (377 aa)
	T265_12016	Uncharacterized protein. (594 aa)
	T265_15497	Uncharacterized protein. (218 aa)
	T265_10473	Uncharacterized protein. (157 aa)
	T265_11669	RT_RNaseH_2 domain-containing protein. (222 aa)
	T265_10214	Uncharacterized protein. (232 aa)
	T265_11387	Uncharacterized protein. (110 aa)
	T265_15034	Uncharacterized protein. (728 aa)
	T265_16347	Uncharacterized protein. (89 aa)
	T265_09847	RT_RNaseH domain-containing protein. (327 aa)
	T265_16213	Parvo_NS1 domain-containing protein. (184 aa)
	T265_16120	Uncharacterized protein. (127 aa)
	T265_10768	Uncharacterized protein. (3047 aa)
	T265_09404	CRC domain-containing protein. (682 aa)
	T265_10582	Uncharacterized protein. (808 aa)
	T265_10417	Uncharacterized protein. (100 aa)
	T265_09246	LITAF domain-containing protein. (93 aa)
	T265_09009	Uncharacterized protein. (381 aa)
	T265_10216	Uncharacterized protein. (443 aa)
	T265_08896	Uncharacterized protein. (468 aa)
	T265_08884	Integrase catalytic domain-containing protein. (276 aa)
	T265_08791	Peptidase A2 domain-containing protein. (1254 aa)
	T265_11782	Uncharacterized protein. (509 aa)
	T265_09922	Uncharacterized protein; Tubulin is the major constituent of microtubules. It binds two moles of GTP, one at an exchangeable site on the beta chain and one at a non-exchangeable site on the alpha chain. (1014 aa)
	T265_09845	RT_RNaseH_2 domain-containing protein. (1011 aa)
	T265_14900	Uncharacterized protein. (154 aa)
	T265_08272	Uncharacterized protein. (108 aa)
	T265_08337	CRIB domain-containing protein. (197 aa)
	T265_07969	Uncharacterized protein. (358 aa)
	T265_09252	E2F_TDP domain-containing protein. (296 aa)
	T265_09181	Integrase catalytic domain-containing protein. (241 aa)
	T265_07798	Uncharacterized protein. (2938 aa)
	T265_15270	Uncharacterized protein. (358 aa)
	T265_10841	USP domain-containing protein; Belongs to the peptidase C19 family. (3195 aa)
	T265_08776	Uncharacterized protein. (182 aa)
	T265_15162	Uncharacterized protein. (343 aa)
	T265_08549	Reverse transcriptase domain-containing protein. (400 aa)
	T265_08531	Integrase catalytic domain-containing protein. (156 aa)
	T265_07305	CRC domain-containing protein. (608 aa)
	T265_07252	DUF4817 domain-containing protein. (175 aa)
	T265_15115	Uncharacterized protein. (153 aa)
	T265_08372	SCP domain-containing protein. (689 aa)
	T265_14204	Integrase catalytic domain-containing protein. (481 aa)
	T265_14183	Uncharacterized protein. (740 aa)
	T265_08165	Uncharacterized protein. (144 aa)
	T265_10032	Reverse transcriptase domain-containing protein. (541 aa)
	T265_06898	Uncharacterized protein. (209 aa)
	T265_06864	Reverse transcriptase domain-containing protein. (394 aa)
	T265_06694	Uncharacterized protein. (76 aa)
	T265_09757	Uncharacterized protein. (662 aa)
	T265_06552	Uncharacterized protein. (396 aa)
	T265_09703	Cytochrome; Electron carrier protein. The oxidized form of the cytochrome c heme group can accept an electron from the heme group of the cytochrome c1 subunit of cytochrome reductase. Cytochrome c then transfers this electron to the cytochrome oxidase complex, the final protein carrier in the mitochondrial electron-transport chain. (108 aa)
	T265_09660	Uncharacterized protein. (112 aa)
	T265_06278	Uncharacterized protein. (604 aa)
	T265_07090	DP domain-containing protein. (359 aa)
	T265_05745	Uncharacterized protein. (1698 aa)
	T265_08729	Uncharacterized protein. (504 aa)
	T265_05696	Integrase catalytic domain-containing protein. (409 aa)
	T265_05588	Uncharacterized protein. (693 aa)
	T265_14560	Integrase catalytic domain-containing protein. (1621 aa)
	T265_05079	DUF4817 domain-containing protein. (352 aa)
	T265_04991	Integrase catalytic domain-containing protein. (269 aa)
	T265_13677	Uncharacterized protein. (252 aa)
	T265_08003	Uncharacterized protein; Belongs to the peptidase C14A family. (356 aa)
	T265_05988	Uncharacterized protein. (99 aa)
	T265_13540	Uncharacterized protein. (458 aa)
	T265_04394	Uncharacterized protein. (652 aa)
	T265_13486	Uncharacterized protein. (763 aa)
	T265_13799	Integrase catalytic domain-containing protein. (850 aa)
	T265_04421	Uncharacterized protein. (4291 aa)
	T265_13723	Uncharacterized protein. (292 aa)
	T265_05236	Integrase catalytic domain-containing protein. (235 aa)
	T265_07026	Uncharacterized protein. (244 aa)
	T265_03961	Uncharacterized protein. (126 aa)
	T265_03720	Uncharacterized protein. (403 aa)
	T265_06619	Uncharacterized protein. (289 aa)
	T265_04640	RT_RNaseH domain-containing protein. (330 aa)
	T265_02804	RT_RNaseH domain-containing protein. (333 aa)
	T265_12134	Integrase catalytic domain-containing protein. (332 aa)
	T265_13876	Reverse transcriptase domain-containing protein. (311 aa)
	T265_05794	Uncharacterized protein. (207 aa)
	T265_13334	Uncharacterized protein. (687 aa)
	T265_15705	MULE domain-containing protein. (337 aa)
	T265_02376	Cystatin domain-containing protein. (164 aa)
	T265_13820	Reverse transcriptase domain-containing protein. (1316 aa)
	T265_03444	RT_RNaseH domain-containing protein. (210 aa)
	T265_02374	Cystatin domain-containing protein. (100 aa)
	T265_12999	DUF4817 domain-containing protein. (216 aa)
	T265_02064	Uncharacterized protein. (108 aa)
	T265_01953	HTH myb-type domain-containing protein. (737 aa)
	T265_05263	CRC domain-containing protein. (610 aa)
	T265_01730	Uncharacterized protein. (376 aa)
	T265_02788	Uncharacterized protein. (326 aa)
	T265_04821	DUF4817 domain-containing protein. (258 aa)
	T265_11124	Reverse transcriptase domain-containing protein. (322 aa)
	T265_01559	RT_RNaseH domain-containing protein. (145 aa)
	T265_02440	Uncharacterized protein. (679 aa)
	T265_02123	Uncharacterized protein. (402 aa)
	T265_12735	Uncharacterized protein. (242 aa)
	T265_00768	Uncharacterized protein. (166 aa)
	T265_00942	Peptidase A2 domain-containing protein. (518 aa)
	T265_13402	Uncharacterized protein. (3209 aa)
	T265_00655	Uncharacterized protein. (74 aa)
	T265_00814	Uncharacterized protein. (346 aa)
	T265_10278	Uncharacterized protein. (204 aa)
	T265_03790	Uncharacterized protein. (1181 aa)
	T265_03680	Uncharacterized protein. (794 aa)
	T265_03616	Integrase catalytic domain-containing protein. (343 aa)
	T265_03300	DIRP domain-containing protein. (672 aa)
	T265_03255	DUF4817 domain-containing protein. (379 aa)
	T265_03054	Apoptosis regulator protein, Bcl-2 family. (199 aa)
	T265_09433	Integrase catalytic domain-containing protein. (485 aa)
	T265_09379	Uncharacterized protein. (214 aa)
	T265_00765	Uncharacterized protein; Belongs to the peptidase C14A family. (372 aa)
	T265_08678	Uncharacterized protein. (544 aa)
	T265_08056	Uncharacterized protein. (141 aa)
	T265_01385	Uncharacterized protein. (4665 aa)
	T265_07986	Integrase catalytic domain-containing protein. (312 aa)
	T265_01197	Uncharacterized protein. (87 aa)
	T265_07532	RT_RNaseH_2 domain-containing protein. (212 aa)
	T265_00922	Uncharacterized protein. (202 aa)
	T265_07148	Uncharacterized protein. (324 aa)
	T265_06772	Uncharacterized protein. (134 aa)
	T265_06692	Uncharacterized protein. (142 aa)
	T265_06260	Uncharacterized protein. (2158 aa)
	T265_06144	Uncharacterized protein. (411 aa)
	T265_13933	Uncharacterized protein. (386 aa)
	T265_05955	Integrase_H2C2 domain-containing protein. (364 aa)
	T265_05193	Uncharacterized protein. (143 aa)
	T265_04623	Uncharacterized protein. (267 aa)
	T265_02702	Uncharacterized protein. (253 aa)
	T265_02088	LITAF domain-containing protein. (139 aa)
	T265_01906	Uncharacterized protein. (226 aa)
	T265_12749	Lin-52-like family protein. (89 aa)

Your Current Organism:

Opisthorchis viverrini

NCBI taxonomy Id: 6198
Other names: O. viverrini, Southeast Asian liver fluke

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
T265_00655	T265_08791	A0A075A1D5	A0A074Z7X6	Uncharacterized protein.	Peptidase A2 domain-containing protein.	0.404
T265_00655	T265_11387	A0A075A1D5	A0A074Z361	Uncharacterized protein.	Uncharacterized protein.	0.456
T265_00655	T265_12749	A0A075A1D5	A0A075AJ47	Uncharacterized protein.	Lin-52-like family protein.	0.433
T265_00765	T265_02374	A0A075A589	A0A074ZW25	Uncharacterized protein; Belongs to the peptidase C14A family.	Cystatin domain-containing protein.	0.522
T265_00765	T265_02376	A0A075A589	A0A074ZV20	Uncharacterized protein; Belongs to the peptidase C14A family.	Cystatin domain-containing protein.	0.522
T265_00765	T265_03054	A0A075A589	A0A075A4S7	Uncharacterized protein; Belongs to the peptidase C14A family.	Apoptosis regulator protein, Bcl-2 family.	0.415
T265_00765	T265_06260	A0A075A589	A0A075AE76	Uncharacterized protein; Belongs to the peptidase C14A family.	Uncharacterized protein.	0.898
T265_00765	T265_06552	A0A075A589	A0A074ZFT2	Uncharacterized protein; Belongs to the peptidase C14A family.	Uncharacterized protein.	0.428
T265_00765	T265_09703	A0A075A589	A0A074ZFW7	Uncharacterized protein; Belongs to the peptidase C14A family.	Cytochrome; Electron carrier protein. The oxidized form of the cytochrome c heme group can accept an electron from the heme group of the cytochrome c1 subunit of cytochrome reductase. Cytochrome c then transfers this electron to the cytochrome oxidase complex, the final protein carrier in the mitochondrial electron-transport chain.	0.714
T265_00765	T265_12016	A0A075A589	A0A074Z0U2	Uncharacterized protein; Belongs to the peptidase C14A family.	Uncharacterized protein.	0.415
T265_00765	T265_12232	A0A075A589	A0A074YZB1	Uncharacterized protein; Belongs to the peptidase C14A family.	Uncharacterized protein.	0.415
T265_00765	T265_13334	A0A075A589	A0A074ZUR7	Uncharacterized protein; Belongs to the peptidase C14A family.	Uncharacterized protein.	0.418
T265_00765	T265_13540	A0A075A589	A0A074ZML1	Uncharacterized protein; Belongs to the peptidase C14A family.	Uncharacterized protein.	0.606
T265_00814	T265_08791	A0A075A1S4	A0A074Z7X6	Uncharacterized protein.	Peptidase A2 domain-containing protein.	0.431
T265_00814	T265_12749	A0A075A1S4	A0A075AJ47	Uncharacterized protein.	Lin-52-like family protein.	0.453
T265_00942	T265_08791	A0A075A0Y4	A0A074Z7X6	Peptidase A2 domain-containing protein.	Peptidase A2 domain-containing protein.	0.431
T265_00942	T265_12749	A0A075A0Y4	A0A075AJ47	Peptidase A2 domain-containing protein.	Lin-52-like family protein.	0.453
T265_01197	T265_08791	A0A075AAD0	A0A074Z7X6	Uncharacterized protein.	Peptidase A2 domain-containing protein.	0.404
T265_01197	T265_12749	A0A075AAD0	A0A075AJ47	Uncharacterized protein.	Lin-52-like family protein.	0.433
T265_01385	T265_06552	A0A075A9S0	A0A074ZFT2	Uncharacterized protein.	Uncharacterized protein.	0.863