(10 nodes) Dendrite membrane network (Opisthorchis viverrini)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	T265_11451	Uncharacterized protein. (288 aa)
	T265_08553	Integrase_H2C2 domain-containing protein. (395 aa)
	T265_08089	Uncharacterized protein. (161 aa)
	T265_09025	Uncharacterized protein. (239 aa)
	T265_07318	Uncharacterized protein. (372 aa)
	T265_06298	Uncharacterized protein. (182 aa)
	T265_07851	Uncharacterized protein. (366 aa)
	T265_11803	Uncharacterized protein. (304 aa)
	T265_05040	Uncharacterized protein. (392 aa)
	T265_13163	Uncharacterized protein. (308 aa)

Your Current Organism:

Opisthorchis viverrini

NCBI taxonomy Id: 6198
Other names: O. viverrini, Southeast Asian liver fluke

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
T265_05040	T265_06298	A0A074ZXJ0	A0A074ZGN0	Uncharacterized protein.	Uncharacterized protein.	0.526
T265_05040	T265_07318	A0A074ZXJ0	A0A074ZDB4	Uncharacterized protein.	Uncharacterized protein.	0.531
T265_05040	T265_07851	A0A074ZXJ0	A0A074ZM86	Uncharacterized protein.	Uncharacterized protein.	0.469
T265_05040	T265_08089	A0A074ZXJ0	A0A074ZAS4	Uncharacterized protein.	Uncharacterized protein.	0.488
T265_05040	T265_08553	A0A074ZXJ0	A0A074Z8V1	Uncharacterized protein.	Integrase_H2C2 domain-containing protein.	0.532
T265_05040	T265_09025	A0A074ZXJ0	A0A074ZBN4	Uncharacterized protein.	Uncharacterized protein.	0.501
T265_05040	T265_11451	A0A074ZXJ0	A0A074Z2Y4	Uncharacterized protein.	Uncharacterized protein.	0.535
T265_05040	T265_11803	A0A074ZXJ0	A0A074ZW46	Uncharacterized protein.	Uncharacterized protein.	0.521
T265_05040	T265_13163	A0A074ZXJ0	A0A075AHT6	Uncharacterized protein.	Uncharacterized protein.	0.532
T265_06298	T265_05040	A0A074ZGN0	A0A074ZXJ0	Uncharacterized protein.	Uncharacterized protein.	0.526
T265_06298	T265_07851	A0A074ZGN0	A0A074ZM86	Uncharacterized protein.	Uncharacterized protein.	0.434
T265_06298	T265_08089	A0A074ZGN0	A0A074ZAS4	Uncharacterized protein.	Uncharacterized protein.	0.518
T265_06298	T265_08553	A0A074ZGN0	A0A074Z8V1	Uncharacterized protein.	Integrase_H2C2 domain-containing protein.	0.541
T265_06298	T265_09025	A0A074ZGN0	A0A074ZBN4	Uncharacterized protein.	Uncharacterized protein.	0.492
T265_06298	T265_11803	A0A074ZGN0	A0A074ZW46	Uncharacterized protein.	Uncharacterized protein.	0.505
T265_07318	T265_05040	A0A074ZDB4	A0A074ZXJ0	Uncharacterized protein.	Uncharacterized protein.	0.531
T265_07318	T265_07851	A0A074ZDB4	A0A074ZM86	Uncharacterized protein.	Uncharacterized protein.	0.427
T265_07318	T265_08089	A0A074ZDB4	A0A074ZAS4	Uncharacterized protein.	Uncharacterized protein.	0.504
T265_07318	T265_08553	A0A074ZDB4	A0A074Z8V1	Uncharacterized protein.	Integrase_H2C2 domain-containing protein.	0.544
T265_07318	T265_09025	A0A074ZDB4	A0A074ZBN4	Uncharacterized protein.	Uncharacterized protein.	0.506