(18 nodes) Mixed, incl. RhoGEF domain, and MAP kinase-activating death domain protein network (Opisthorchis viverrini)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	T265_11614	Uncharacterized protein. (126 aa)
	T265_15007	Uncharacterized protein. (383 aa)
	T265_14989	DH domain-containing protein. (867 aa)
	T265_15156	DH domain-containing protein. (843 aa)
	T265_11671	Uncharacterized protein. (953 aa)
	T265_10443	Uncharacterized protein. (961 aa)
	T265_14139	Uncharacterized protein. (527 aa)
	T265_07617	Uncharacterized protein. (946 aa)
	T265_06090	Uncharacterized protein. (98 aa)
	T265_06088	Uncharacterized protein. (699 aa)
	T265_14138	UDENN domain-containing protein. (714 aa)
	T265_11670	Uncharacterized protein. (3840 aa)
	T265_01727	UDENN domain-containing protein. (1791 aa)
	T265_01423	Uncharacterized protein. (884 aa)
	T265_15334	Uncharacterized protein. (3773 aa)
	T265_12415	DH domain-containing protein. (1047 aa)
	T265_14530	RGS-like domain-containing protein. (568 aa)
	T265_00857	DH domain-containing protein. (1163 aa)

Your Current Organism:

Opisthorchis viverrini

NCBI taxonomy Id: 6198
Other names: O. viverrini, Southeast Asian liver fluke

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
T265_01727	T265_11614	A0A074ZXC4	A0A074YY35	UDENN domain-containing protein.	Uncharacterized protein.	0.407
T265_01727	T265_15156	A0A074ZXC4	A0A074Z6I1	UDENN domain-containing protein.	DH domain-containing protein.	0.407
T265_06088	T265_11670	A0A074ZIC8	A0A074ZWQ5	Uncharacterized protein.	Uncharacterized protein.	0.412
T265_06088	T265_11671	A0A074ZIC8	A0A074Z8Q8	Uncharacterized protein.	Uncharacterized protein.	0.412
T265_06088	T265_15007	A0A074ZIC8	A0A074Z448	Uncharacterized protein.	Uncharacterized protein.	0.412
T265_06088	T265_15334	A0A074ZIC8	A0A074ZYV0	Uncharacterized protein.	Uncharacterized protein.	0.412
T265_06090	T265_11670	A0A074ZHJ8	A0A074ZWQ5	Uncharacterized protein.	Uncharacterized protein.	0.412
T265_06090	T265_11671	A0A074ZHJ8	A0A074Z8Q8	Uncharacterized protein.	Uncharacterized protein.	0.412
T265_06090	T265_15007	A0A074ZHJ8	A0A074Z448	Uncharacterized protein.	Uncharacterized protein.	0.412
T265_06090	T265_15334	A0A074ZHJ8	A0A074ZYV0	Uncharacterized protein.	Uncharacterized protein.	0.412
T265_07617	T265_12415	A0A074ZGK5	A0A075A423	Uncharacterized protein.	DH domain-containing protein.	0.426
T265_11614	T265_01727	A0A074YY35	A0A074ZXC4	Uncharacterized protein.	UDENN domain-containing protein.	0.407
T265_11614	T265_11670	A0A074YY35	A0A074ZWQ5	Uncharacterized protein.	Uncharacterized protein.	0.421
T265_11614	T265_11671	A0A074YY35	A0A074Z8Q8	Uncharacterized protein.	Uncharacterized protein.	0.421
T265_11614	T265_12415	A0A074YY35	A0A075A423	Uncharacterized protein.	DH domain-containing protein.	0.485
T265_11614	T265_14138	A0A074YY35	A0A074ZR57	Uncharacterized protein.	UDENN domain-containing protein.	0.407
T265_11614	T265_14139	A0A074YY35	A0A074ZEV0	Uncharacterized protein.	Uncharacterized protein.	0.407
T265_11614	T265_15007	A0A074YY35	A0A074Z448	Uncharacterized protein.	Uncharacterized protein.	0.421
T265_11614	T265_15334	A0A074YY35	A0A074ZYV0	Uncharacterized protein.	Uncharacterized protein.	0.421
T265_11670	T265_06088	A0A074ZWQ5	A0A074ZIC8	Uncharacterized protein.	Uncharacterized protein.	0.412