(18 nodes) Processing of Intronless Pre-mRNAs network (Opisthorchis viverrini)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	T265_16107	Uncharacterized protein. (221 aa)
	T265_11825	Protein CLP1 homolog; Required for endonucleolytic cleavage during polyadenylation- dependent pre-mRNA 3'-end formation; Belongs to the Clp1 family. Clp1 subfamily. (443 aa)
	T265_11773	Fip1 domain-containing protein. (606 aa)
	T265_14748	Reverse transcriptase domain-containing protein. (967 aa)
	T265_15517	Uncharacterized protein. (311 aa)
	T265_09261	Uncharacterized protein. (1895 aa)
	T265_06603	Cleavage and polyadenylation specificity factor subunit 2. (1159 aa)
	T265_05487	WD_REPEATS_REGION domain-containing protein. (325 aa)
	T265_04793	RRM domain-containing protein. (437 aa)
	T265_04343	WD_REPEATS_REGION domain-containing protein. (726 aa)
	T265_02688	WD_REPEATS_REGION domain-containing protein. (441 aa)
	T265_11439	Uncharacterized protein. (664 aa)
	T265_12436	Uncharacterized protein. (425 aa)
	T265_09152	Uncharacterized protein. (890 aa)
	T265_01349	Reverse transcriptase domain-containing protein. (2192 aa)
	T265_06732	CID domain-containing protein. (961 aa)
	T265_02907	Poly(A) polymerase; Polymerase that creates the 3'-poly(A) tail of mRNA's. (752 aa)
	T265_00534	Uncharacterized protein. (518 aa)

Your Current Organism:

Opisthorchis viverrini

NCBI taxonomy Id: 6198
Other names: O. viverrini, Southeast Asian liver fluke

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
T265_00534	T265_01349	A0A075AJM5	A0A075AAA2	Uncharacterized protein.	Reverse transcriptase domain-containing protein.	0.999
T265_00534	T265_02688	A0A075AJM5	A0A074ZV37	Uncharacterized protein.	WD_REPEATS_REGION domain-containing protein.	0.932
T265_00534	T265_02907	A0A075AJM5	A0A075AHZ9	Uncharacterized protein.	Poly(A) polymerase; Polymerase that creates the 3'-poly(A) tail of mRNA's.	0.990
T265_00534	T265_04343	A0A075AJM5	A0A074ZPA7	Uncharacterized protein.	WD_REPEATS_REGION domain-containing protein.	0.999
T265_00534	T265_04793	A0A075AJM5	A0A074ZLU2	Uncharacterized protein.	RRM domain-containing protein.	0.985
T265_00534	T265_05487	A0A075AJM5	A0A074ZK67	Uncharacterized protein.	WD_REPEATS_REGION domain-containing protein.	0.997
T265_00534	T265_06603	A0A075AJM5	A0A074ZJX1	Uncharacterized protein.	Cleavage and polyadenylation specificity factor subunit 2.	0.999
T265_00534	T265_06732	A0A075AJM5	A0A075AD97	Uncharacterized protein.	CID domain-containing protein.	0.989
T265_00534	T265_09152	A0A075AJM5	A0A075A5U8	Uncharacterized protein.	Uncharacterized protein.	0.996
T265_00534	T265_09261	A0A075AJM5	A0A074ZHI9	Uncharacterized protein.	Uncharacterized protein.	0.972
T265_00534	T265_11439	A0A075AJM5	A0A074ZXH2	Uncharacterized protein.	Uncharacterized protein.	0.901
T265_00534	T265_11773	A0A075AJM5	A0A074YXR5	Uncharacterized protein.	Fip1 domain-containing protein.	0.998
T265_00534	T265_11825	A0A075AJM5	A0A074YXJ2	Uncharacterized protein.	Protein CLP1 homolog; Required for endonucleolytic cleavage during polyadenylation- dependent pre-mRNA 3'-end formation; Belongs to the Clp1 family. Clp1 subfamily.	0.914
T265_00534	T265_12436	A0A075AJM5	A0A075A3D7	Uncharacterized protein.	Uncharacterized protein.	0.956
T265_00534	T265_14748	A0A075AJM5	A0A074Z759	Uncharacterized protein.	Reverse transcriptase domain-containing protein.	0.967
T265_00534	T265_15517	A0A075AJM5	A0A074Z8G2	Uncharacterized protein.	Uncharacterized protein.	0.998
T265_00534	T265_16107	A0A075AJM5	A0A074YUI4	Uncharacterized protein.	Uncharacterized protein.	0.972
T265_01349	T265_00534	A0A075AAA2	A0A075AJM5	Reverse transcriptase domain-containing protein.	Uncharacterized protein.	0.999
T265_01349	T265_02688	A0A075AAA2	A0A074ZV37	Reverse transcriptase domain-containing protein.	WD_REPEATS_REGION domain-containing protein.	0.889
T265_01349	T265_02907	A0A075AAA2	A0A075AHZ9	Reverse transcriptase domain-containing protein.	Poly(A) polymerase; Polymerase that creates the 3'-poly(A) tail of mRNA's.	0.997