5 items (Opisthorchis viverrini) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	T265_15381	Peptidylprolyl isomerase. (501 aa)
	T265_15841	Uncharacterized protein. (235 aa)
	T265_13358	TPR_REGION domain-containing protein. (483 aa)
	T265_04546	Uncharacterized protein. (301 aa)
	T265_09254	Uncharacterized protein. (5727 aa)

Your Current Organism:

Opisthorchis viverrini

NCBI taxonomy Id: 6198
Other names: O. viverrini, Southeast Asian liver fluke

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structured XML interaction data, according to the 'PSI-MI' data standard

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a flat-file format describing the coordinates and colors of nodes in the network

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MFA: multi-fasta format - containing the aminoacid sequences in the network

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
T265_09254	T265_13358	A0A075A5M8	A0A074ZQV8	Uncharacterized protein.	TPR_REGION domain-containing protein.	0.747
T265_09254	T265_15381	A0A075A5M8	A0A074YZJ0	Uncharacterized protein.	Peptidylprolyl isomerase.	0.747
T265_09254	T265_15841	A0A075A5M8	A0A074YZX2	Uncharacterized protein.	Uncharacterized protein.	0.416
T265_13358	T265_09254	A0A074ZQV8	A0A075A5M8	TPR_REGION domain-containing protein.	Uncharacterized protein.	0.747
T265_13358	T265_15841	A0A074ZQV8	A0A074YZX2	TPR_REGION domain-containing protein.	Uncharacterized protein.	0.747
T265_15381	T265_09254	A0A074YZJ0	A0A075A5M8	Peptidylprolyl isomerase.	Uncharacterized protein.	0.747
T265_15381	T265_15841	A0A074YZJ0	A0A074YZX2	Peptidylprolyl isomerase.	Uncharacterized protein.	0.747
T265_15841	T265_09254	A0A074YZX2	A0A075A5M8	Uncharacterized protein.	Uncharacterized protein.	0.416
T265_15841	T265_13358	A0A074YZX2	A0A074ZQV8	Uncharacterized protein.	TPR_REGION domain-containing protein.	0.747
T265_15841	T265_15381	A0A074YZX2	A0A074YZJ0	Uncharacterized protein.	Peptidylprolyl isomerase.	0.747