(6 nodes) Mixed, incl. Postsynaptic density membrane, and Vang-like protein network (Opisthorchis viverrini)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	T265_05777	Uncharacterized protein. (533 aa)
	T265_07588	Uncharacterized protein; Belongs to the MAGUK family. (519 aa)
	T265_15900	PDZ domain-containing protein. (162 aa)
	T265_05198	PDZ domain-containing protein. (494 aa)
	T265_00613	Uncharacterized protein. (193 aa)
	T265_06982	Uncharacterized protein. (700 aa)

Your Current Organism:

Opisthorchis viverrini

NCBI taxonomy Id: 6198
Other names: O. viverrini, Southeast Asian liver fluke

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
T265_00613	T265_05198	A0A075A5C3	A0A074ZWW7	Uncharacterized protein.	PDZ domain-containing protein.	0.645
T265_00613	T265_05777	A0A075A5C3	A0A074ZMT6	Uncharacterized protein.	Uncharacterized protein.	0.765
T265_00613	T265_07588	A0A075A5C3	A0A074ZNE6	Uncharacterized protein.	Uncharacterized protein; Belongs to the MAGUK family.	0.924
T265_00613	T265_15900	A0A075A5C3	A0A074ZU09	Uncharacterized protein.	PDZ domain-containing protein.	0.591
T265_05198	T265_00613	A0A074ZWW7	A0A075A5C3	PDZ domain-containing protein.	Uncharacterized protein.	0.645
T265_05198	T265_05777	A0A074ZWW7	A0A074ZMT6	PDZ domain-containing protein.	Uncharacterized protein.	0.604
T265_05198	T265_06982	A0A074ZWW7	A0A075ACR0	PDZ domain-containing protein.	Uncharacterized protein.	0.454
T265_05777	T265_00613	A0A074ZMT6	A0A075A5C3	Uncharacterized protein.	Uncharacterized protein.	0.765
T265_05777	T265_05198	A0A074ZMT6	A0A074ZWW7	Uncharacterized protein.	PDZ domain-containing protein.	0.604
T265_05777	T265_07588	A0A074ZMT6	A0A074ZNE6	Uncharacterized protein.	Uncharacterized protein; Belongs to the MAGUK family.	0.800
T265_05777	T265_15900	A0A074ZMT6	A0A074ZU09	Uncharacterized protein.	PDZ domain-containing protein.	0.532
T265_06982	T265_05198	A0A075ACR0	A0A074ZWW7	Uncharacterized protein.	PDZ domain-containing protein.	0.454
T265_06982	T265_07588	A0A075ACR0	A0A074ZNE6	Uncharacterized protein.	Uncharacterized protein; Belongs to the MAGUK family.	0.454
T265_06982	T265_15900	A0A075ACR0	A0A074ZU09	Uncharacterized protein.	PDZ domain-containing protein.	0.546
T265_07588	T265_00613	A0A074ZNE6	A0A075A5C3	Uncharacterized protein; Belongs to the MAGUK family.	Uncharacterized protein.	0.924
T265_07588	T265_05777	A0A074ZNE6	A0A074ZMT6	Uncharacterized protein; Belongs to the MAGUK family.	Uncharacterized protein.	0.800
T265_07588	T265_06982	A0A074ZNE6	A0A075ACR0	Uncharacterized protein; Belongs to the MAGUK family.	Uncharacterized protein.	0.454
T265_07588	T265_15900	A0A074ZNE6	A0A074ZU09	Uncharacterized protein; Belongs to the MAGUK family.	PDZ domain-containing protein.	0.414
T265_15900	T265_00613	A0A074ZU09	A0A075A5C3	PDZ domain-containing protein.	Uncharacterized protein.	0.591
T265_15900	T265_05777	A0A074ZU09	A0A074ZMT6	PDZ domain-containing protein.	Uncharacterized protein.	0.532