(42 nodes) Mixed, incl. Energy dependent regulation of mTOR by LKB1-AMPK, and Protein phosphatase 2C family network (Opisthorchis viverrini)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	T265_16137	Protein kinase domain-containing protein. (164 aa)
	T265_15925	Uncharacterized protein. (93 aa)
	T265_15923	Uncharacterized protein. (220 aa)
	T265_12080	Uncharacterized protein. (250 aa)
	T265_11707	Uncharacterized protein. (376 aa)
	T265_11369	Uncharacterized protein. (744 aa)
	T265_09940	EF hand. (144 aa)
	T265_09888	AMPKBI domain-containing protein. (341 aa)
	T265_09629	AMPKBI domain-containing protein. (515 aa)
	T265_15262	PPM-type phosphatase domain-containing protein. (431 aa)
	T265_10649	Protein kinase domain-containing protein. (556 aa)
	T265_14358	Uncharacterized protein. (148 aa)
	T265_08749	Uncharacterized protein. (179 aa)
	T265_07187	PPM-type phosphatase domain-containing protein. (621 aa)
	T265_14078	Eph LBD domain-containing protein. (308 aa)
	T265_14001	Uncharacterized protein. (688 aa)
	T265_13848	Uncharacterized protein. (516 aa)
	T265_05870	Uncharacterized protein. (1045 aa)
	T265_14077	Uncharacterized protein. (160 aa)
	T265_05226	Uncharacterized protein. (1341 aa)
	T265_08336	Uncharacterized protein. (474 aa)
	T265_03888	Uncharacterized protein. (385 aa)
	T265_16062	Uncharacterized protein. (76 aa)
	T265_02615	PPM-type phosphatase domain-containing protein. (236 aa)
	T265_15562	Uncharacterized protein. (493 aa)
	T265_11486	Uncharacterized protein. (111 aa)
	T265_01511	Uncharacterized protein. (123 aa)
	T265_02692	PPM-type phosphatase domain-containing protein. (375 aa)
	T265_04140	MATH domain-containing protein. (429 aa)
	T265_10371	Reverse transcriptase domain-containing protein. (1744 aa)
	T265_02555	Protein kinase domain-containing protein. (778 aa)
	T265_12465	Uncharacterized protein. (331 aa)
	T265_08139	Uncharacterized protein. (469 aa)
	T265_14458	Uncharacterized protein. (521 aa)
	T265_00866	Uncharacterized protein. (528 aa)
	T265_04823	Protein kinase domain-containing protein. (1040 aa)
	T265_13356	Protein kinase domain-containing protein. (459 aa)
	T265_03563	PPM-type phosphatase domain-containing protein. (150 aa)
	T265_13262	Uncharacterized protein. (1378 aa)
	T265_13018	Non-specific serine/threonine protein kinase. (751 aa)
	T265_12934	Uncharacterized protein. (152 aa)
	T265_01759	Protein kinase domain-containing protein. (497 aa)

Your Current Organism:

Opisthorchis viverrini

NCBI taxonomy Id: 6198
Other names: O. viverrini, Southeast Asian liver fluke

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
T265_00866	T265_04140	A0A075ABI8	A0A075A131	Uncharacterized protein.	MATH domain-containing protein.	0.509
T265_00866	T265_05870	A0A075ABI8	A0A074ZIZ0	Uncharacterized protein.	Uncharacterized protein.	0.401
T265_00866	T265_08336	A0A075ABI8	A0A074ZKI3	Uncharacterized protein.	Uncharacterized protein.	0.437
T265_00866	T265_14077	A0A075ABI8	A0A074ZJY1	Uncharacterized protein.	Uncharacterized protein.	0.499
T265_00866	T265_14078	A0A075ABI8	A0A074ZFV9	Uncharacterized protein.	Eph LBD domain-containing protein.	0.404
T265_00866	T265_14358	A0A075ABI8	A0A074ZC39	Uncharacterized protein.	Uncharacterized protein.	0.667
T265_00866	T265_16137	A0A075ABI8	A0A074YUD7	Uncharacterized protein.	Protein kinase domain-containing protein.	0.437
T265_01511	T265_01759	A0A074ZYB7	A0A075AIS4	Uncharacterized protein.	Protein kinase domain-containing protein.	0.406
T265_01511	T265_02615	A0A074ZYB7	A0A074ZV86	Uncharacterized protein.	PPM-type phosphatase domain-containing protein.	0.415
T265_01511	T265_02692	A0A074ZYB7	A0A074ZYE6	Uncharacterized protein.	PPM-type phosphatase domain-containing protein.	0.482
T265_01511	T265_03563	A0A074ZYB7	A0A075AHG9	Uncharacterized protein.	PPM-type phosphatase domain-containing protein.	0.482
T265_01511	T265_05226	A0A074ZYB7	A0A074ZKE9	Uncharacterized protein.	Uncharacterized protein.	0.542
T265_01511	T265_07187	A0A074ZYB7	A0A074ZDQ7	Uncharacterized protein.	PPM-type phosphatase domain-containing protein.	0.415
T265_01511	T265_08749	A0A074ZYB7	A0A074ZCK1	Uncharacterized protein.	Uncharacterized protein.	0.402
T265_01511	T265_09629	A0A074ZYB7	A0A074Z556	Uncharacterized protein.	AMPKBI domain-containing protein.	0.590
T265_01511	T265_09888	A0A074ZYB7	A0A074Z4A1	Uncharacterized protein.	AMPKBI domain-containing protein.	0.590
T265_01511	T265_09940	A0A074ZYB7	A0A074Z444	Uncharacterized protein.	EF hand.	0.436
T265_01511	T265_11486	A0A074ZYB7	A0A074ZXB3	Uncharacterized protein.	Uncharacterized protein.	0.542
T265_01511	T265_12080	A0A074ZYB7	A0A074YW12	Uncharacterized protein.	Uncharacterized protein.	0.436
T265_01511	T265_12465	A0A074ZYB7	A0A075A6H6	Uncharacterized protein.	Uncharacterized protein.	0.542