(8 nodes) Mixed, incl. Cell junction maintenance, and LAR-interacting protein, Liprin network (Opisthorchis viverrini)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	T265_10249	Uncharacterized protein. (1890 aa)
	T265_05132	Uncharacterized protein. (530 aa)
	T265_03134	Uncharacterized protein. (2115 aa)
	T265_13171	Uncharacterized protein. (439 aa)
	T265_12471	Uncharacterized protein. (778 aa)
	T265_01347	SAM domain-containing protein. (905 aa)
	T265_00175	Uncharacterized protein. (1063 aa)
	T265_12470	Uncharacterized protein. (877 aa)

Your Current Organism:

Opisthorchis viverrini

NCBI taxonomy Id: 6198
Other names: O. viverrini, Southeast Asian liver fluke

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
T265_00175	T265_01347	A0A075A3L7	A0A075A367	Uncharacterized protein.	SAM domain-containing protein.	0.743
T265_00175	T265_05132	A0A075A3L7	A0A074ZQ26	Uncharacterized protein.	Uncharacterized protein.	0.743
T265_00175	T265_10249	A0A075A3L7	A0A074ZE04	Uncharacterized protein.	Uncharacterized protein.	0.837
T265_00175	T265_12470	A0A075A3L7	A0A075A6J2	Uncharacterized protein.	Uncharacterized protein.	0.471
T265_00175	T265_12471	A0A075A3L7	A0A075A2P7	Uncharacterized protein.	Uncharacterized protein.	0.471
T265_01347	T265_00175	A0A075A367	A0A075A3L7	SAM domain-containing protein.	Uncharacterized protein.	0.743
T265_01347	T265_03134	A0A075A367	A0A074ZSJ8	SAM domain-containing protein.	Uncharacterized protein.	0.455
T265_01347	T265_13171	A0A075A367	A0A074ZWV2	SAM domain-containing protein.	Uncharacterized protein.	0.455
T265_03134	T265_01347	A0A074ZSJ8	A0A075A367	Uncharacterized protein.	SAM domain-containing protein.	0.455
T265_03134	T265_05132	A0A074ZSJ8	A0A074ZQ26	Uncharacterized protein.	Uncharacterized protein.	0.455
T265_03134	T265_10249	A0A074ZSJ8	A0A074ZE04	Uncharacterized protein.	Uncharacterized protein.	0.524
T265_05132	T265_00175	A0A074ZQ26	A0A075A3L7	Uncharacterized protein.	Uncharacterized protein.	0.743
T265_05132	T265_03134	A0A074ZQ26	A0A074ZSJ8	Uncharacterized protein.	Uncharacterized protein.	0.455
T265_05132	T265_13171	A0A074ZQ26	A0A074ZWV2	Uncharacterized protein.	Uncharacterized protein.	0.455
T265_10249	T265_00175	A0A074ZE04	A0A075A3L7	Uncharacterized protein.	Uncharacterized protein.	0.837
T265_10249	T265_03134	A0A074ZE04	A0A074ZSJ8	Uncharacterized protein.	Uncharacterized protein.	0.524
T265_10249	T265_12470	A0A074ZE04	A0A075A6J2	Uncharacterized protein.	Uncharacterized protein.	0.583
T265_10249	T265_12471	A0A074ZE04	A0A075A2P7	Uncharacterized protein.	Uncharacterized protein.	0.583
T265_10249	T265_13171	A0A074ZE04	A0A074ZWV2	Uncharacterized protein.	Uncharacterized protein.	0.524
T265_12470	T265_00175	A0A075A6J2	A0A075A3L7	Uncharacterized protein.	Uncharacterized protein.	0.471