5 items (Opisthorchis viverrini) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	T265_10978	Uncharacterized protein. (866 aa)
	T265_09555	Uncharacterized protein. (1102 aa)
	T265_01951	EF-hand domain-containing protein. (929 aa)
	T265_12690	Uncharacterized protein. (790 aa)
	T265_03736	Uncharacterized protein. (361 aa)

Your Current Organism:

Opisthorchis viverrini

NCBI taxonomy Id: 6198
Other names: O. viverrini, Southeast Asian liver fluke

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
T265_01951	T265_03736	A0A074ZXN7	A0A075A2H0	EF-hand domain-containing protein.	Uncharacterized protein.	0.931
T265_01951	T265_09555	A0A074ZXN7	A0A074Z5I6	EF-hand domain-containing protein.	Uncharacterized protein.	0.982
T265_01951	T265_10978	A0A074ZXN7	A0A074Z0B1	EF-hand domain-containing protein.	Uncharacterized protein.	0.958
T265_01951	T265_12690	A0A074ZXN7	A0A075A170	EF-hand domain-containing protein.	Uncharacterized protein.	0.995
T265_03736	T265_01951	A0A075A2H0	A0A074ZXN7	Uncharacterized protein.	EF-hand domain-containing protein.	0.931
T265_03736	T265_09555	A0A075A2H0	A0A074Z5I6	Uncharacterized protein.	Uncharacterized protein.	0.971
T265_03736	T265_10978	A0A075A2H0	A0A074Z0B1	Uncharacterized protein.	Uncharacterized protein.	0.966
T265_03736	T265_12690	A0A075A2H0	A0A075A170	Uncharacterized protein.	Uncharacterized protein.	0.976
T265_09555	T265_01951	A0A074Z5I6	A0A074ZXN7	Uncharacterized protein.	EF-hand domain-containing protein.	0.982
T265_09555	T265_03736	A0A074Z5I6	A0A075A2H0	Uncharacterized protein.	Uncharacterized protein.	0.971
T265_09555	T265_10978	A0A074Z5I6	A0A074Z0B1	Uncharacterized protein.	Uncharacterized protein.	0.985
T265_09555	T265_12690	A0A074Z5I6	A0A075A170	Uncharacterized protein.	Uncharacterized protein.	0.908
T265_10978	T265_01951	A0A074Z0B1	A0A074ZXN7	Uncharacterized protein.	EF-hand domain-containing protein.	0.958
T265_10978	T265_03736	A0A074Z0B1	A0A075A2H0	Uncharacterized protein.	Uncharacterized protein.	0.966
T265_10978	T265_09555	A0A074Z0B1	A0A074Z5I6	Uncharacterized protein.	Uncharacterized protein.	0.985
T265_10978	T265_12690	A0A074Z0B1	A0A075A170	Uncharacterized protein.	Uncharacterized protein.	0.985
T265_12690	T265_01951	A0A075A170	A0A074ZXN7	Uncharacterized protein.	EF-hand domain-containing protein.	0.995
T265_12690	T265_03736	A0A075A170	A0A075A2H0	Uncharacterized protein.	Uncharacterized protein.	0.976
T265_12690	T265_09555	A0A075A170	A0A074Z5I6	Uncharacterized protein.	Uncharacterized protein.	0.908
T265_12690	T265_10978	A0A075A170	A0A074Z0B1	Uncharacterized protein.	Uncharacterized protein.	0.985