(10 nodes) ISG15 antiviral mechanism, and poly(A) binding network (Opisthorchis viverrini)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	T265_10324	PABC domain-containing protein. (315 aa)
	T265_09598	RRM domain-containing protein. (239 aa)
	T265_10323	Uncharacterized protein. (258 aa)
	T265_06361	MIF4G domain-containing protein. (1138 aa)
	T265_13782	Uncharacterized protein; Belongs to the DEAD box helicase family. (455 aa)
	T265_07299	Uncharacterized protein. (106 aa)
	T265_12086	Uncharacterized protein; Belongs to the DEAD box helicase family. (333 aa)
	T265_00778	W2 domain-containing protein. (1358 aa)
	T265_01587	Uncharacterized protein; Belongs to the eukaryotic initiation factor 4E family. (201 aa)
	T265_00007	Integrase catalytic domain-containing protein. (526 aa)

Your Current Organism:

Opisthorchis viverrini

NCBI taxonomy Id: 6198
Other names: O. viverrini, Southeast Asian liver fluke

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
T265_00007	T265_00778	A0A075AJX0	A0A075A4S2	Integrase catalytic domain-containing protein.	W2 domain-containing protein.	0.861
T265_00007	T265_06361	A0A075AJX0	A0A074ZKS0	Integrase catalytic domain-containing protein.	MIF4G domain-containing protein.	0.861
T265_00007	T265_07299	A0A075AJX0	A0A074ZPF7	Integrase catalytic domain-containing protein.	Uncharacterized protein.	0.964
T265_00007	T265_09598	A0A075AJX0	A0A074Z578	Integrase catalytic domain-containing protein.	RRM domain-containing protein.	0.475
T265_00007	T265_10323	A0A075AJX0	A0A074ZDP6	Integrase catalytic domain-containing protein.	Uncharacterized protein.	0.628
T265_00007	T265_10324	A0A075AJX0	A0A074Z2N2	Integrase catalytic domain-containing protein.	PABC domain-containing protein.	0.628
T265_00007	T265_12086	A0A075AJX0	A0A074ZUR4	Integrase catalytic domain-containing protein.	Uncharacterized protein; Belongs to the DEAD box helicase family.	0.817
T265_00007	T265_13782	A0A075AJX0	A0A074ZNY9	Integrase catalytic domain-containing protein.	Uncharacterized protein; Belongs to the DEAD box helicase family.	0.817
T265_00778	T265_00007	A0A075A4S2	A0A075AJX0	W2 domain-containing protein.	Integrase catalytic domain-containing protein.	0.861
T265_00778	T265_01587	A0A075A4S2	A0A075AIW9	W2 domain-containing protein.	Uncharacterized protein; Belongs to the eukaryotic initiation factor 4E family.	0.997
T265_00778	T265_06361	A0A075A4S2	A0A074ZKS0	W2 domain-containing protein.	MIF4G domain-containing protein.	0.933
T265_00778	T265_07299	A0A075A4S2	A0A074ZPF7	W2 domain-containing protein.	Uncharacterized protein.	0.576
T265_00778	T265_09598	A0A075A4S2	A0A074Z578	W2 domain-containing protein.	RRM domain-containing protein.	0.885
T265_00778	T265_10323	A0A075A4S2	A0A074ZDP6	W2 domain-containing protein.	Uncharacterized protein.	0.841
T265_00778	T265_10324	A0A075A4S2	A0A074Z2N2	W2 domain-containing protein.	PABC domain-containing protein.	0.841
T265_00778	T265_12086	A0A075A4S2	A0A074ZUR4	W2 domain-containing protein.	Uncharacterized protein; Belongs to the DEAD box helicase family.	0.986
T265_00778	T265_13782	A0A075A4S2	A0A074ZNY9	W2 domain-containing protein.	Uncharacterized protein; Belongs to the DEAD box helicase family.	0.993
T265_01587	T265_00778	A0A075AIW9	A0A075A4S2	Uncharacterized protein; Belongs to the eukaryotic initiation factor 4E family.	W2 domain-containing protein.	0.997
T265_01587	T265_06361	A0A075AIW9	A0A074ZKS0	Uncharacterized protein; Belongs to the eukaryotic initiation factor 4E family.	MIF4G domain-containing protein.	0.998
T265_01587	T265_07299	A0A075AIW9	A0A074ZPF7	Uncharacterized protein; Belongs to the eukaryotic initiation factor 4E family.	Uncharacterized protein.	0.998