(59 nodes) Mixed, incl. Ribosomal large subunit biogenesis, and GTP binding domain network (Opisthorchis viverrini)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	T265_11214	Uncharacterized protein. (259 aa)
	T265_15212	Uncharacterized protein; Belongs to the class I-like SAM-binding methyltransferase superfamily. RsmB/NOP family. (852 aa)
	T265_15197	WD_REPEATS_REGION domain-containing protein. (677 aa)
	T265_10174	Uncharacterized protein. (165 aa)
	T265_12355	Uncharacterized protein. (72 aa)
	T265_14797	Pescadillo homolog; Required for maturation of ribosomal RNAs and formation of the large ribosomal subunit; Belongs to the pescadillo family. (603 aa)
	T265_09154	Protein MAK16 homolog; Belongs to the MAK16 family. (314 aa)
	T265_09264	zf-C2H2_2 domain-containing protein. (390 aa)
	T265_08757	RNA helicase. (635 aa)
	T265_14982	WD_REPEATS_REGION domain-containing protein. (474 aa)
	T265_11531	Ribosome assembly factor mrt4; Component of the ribosome assembly machinery. Nuclear paralog of the ribosomal protein P0, it binds pre-60S subunits at an early stage of assembly in the nucleolus, and is replaced by P0 in cytoplasmic pre-60S subunits and mature 80S ribosomes. (278 aa)
	T265_09511	Uncharacterized protein. (624 aa)
	T265_14503	Protein SDA1; Required for 60S pre-ribosomal subunits export to the cytoplasm; Belongs to the SDA1 family. (803 aa)
	T265_08726	SURF6 domain-containing protein. (364 aa)
	T265_14631	PUA domain-containing protein. (249 aa)
	T265_07295	C2H2-type domain-containing protein. (133 aa)
	T265_07210	RRM domain-containing protein. (485 aa)
	T265_14190	Uncharacterized protein. (443 aa)
	T265_06461	ATP-dependent RNA helicase; Belongs to the DEAD box helicase family. DDX54/DBP10 subfamily. (849 aa)
	T265_07287	CP-type G domain-containing protein. (768 aa)
	T265_13855	Uncharacterized protein. (1351 aa)
	T265_14014	RRM domain-containing protein. (297 aa)
	T265_06303	Uncharacterized protein. (204 aa)
	T265_06258	Putative rRNA methyltransferase; Probable methyltransferase involved in the maturation of rRNA and in the biogenesis of ribosomal subunits. (1038 aa)
	T265_05076	WD_REPEATS_REGION domain-containing protein. (335 aa)
	T265_06019	Uncharacterized protein. (422 aa)
	T265_06003	Uncharacterized protein. (319 aa)
	T265_04430	Uncharacterized protein. (233 aa)
	T265_13481	RNA helicase. (624 aa)
	T265_05415	60S ribosomal export protein NMD3; Acts as an adapter for the XPO1/CRM1-mediated export of the 60S ribosomal subunit; Belongs to the NMD3 family. (607 aa)
	T265_04060	Uncharacterized protein. (392 aa)
	T265_05191	Nucleolar GTP-binding protein 2; GTPase that associates with pre-60S ribosomal subunits in the nucleolus and is required for their nuclear export and maturation. Belongs to the TRAFAC class YlqF/YawG GTPase family. NOG2 subfamily. (620 aa)
	T265_04171	CPL domain-containing protein. (600 aa)
	T265_07131	Nucleolar GTP-binding protein 1; Involved in the biogenesis of the 60S ribosomal subunit. Belongs to the TRAFAC class OBG-HflX-like GTPase superfamily. OBG GTPase family. NOG subfamily. (688 aa)
	T265_03943	CBF domain-containing protein. (888 aa)
	T265_06561	Uncharacterized protein. (236 aa)
	T265_04395	Uncharacterized protein. (894 aa)
	T265_03913	Uncharacterized protein. (1352 aa)
	T265_05829	TRASH domain-containing protein. (196 aa)
	T265_12095	Uncharacterized protein. (226 aa)
	T265_02429	Brix domain-containing protein. (1251 aa)
	T265_02034	Ribosomal protein, L1P family. (320 aa)
	T265_05101	Uncharacterized protein; Belongs to the DEAD box helicase family. (626 aa)
	T265_03001	G domain-containing protein. (1517 aa)
	T265_13640	NUC173 domain-containing protein. (1583 aa)
	T265_04726	BOP1NT domain-containing protein. (2089 aa)
	T265_10945	WD_REPEATS_REGION domain-containing protein. (493 aa)
	T265_10951	Brix domain-containing protein. (322 aa)
	T265_01256	Uncharacterized protein. (800 aa)
	T265_10651	SAM_MT_RSMB_NOP domain-containing protein; Belongs to the class I-like SAM-binding methyltransferase superfamily. RsmB/NOP family. (705 aa)
	T265_12727	G domain-containing protein. (737 aa)
	T265_12708	Uncharacterized protein. (648 aa)
	T265_03813	Brix domain-containing protein. (363 aa)
	T265_01116	CBF domain-containing protein. (509 aa)
	T265_00352	Uncharacterized protein. (321 aa)
	T265_00035	Putative DNA-binding protein. (391 aa)
	T265_04508	Uncharacterized protein. (192 aa)
	T265_12719	Uncharacterized protein. (216 aa)
	T265_01099	Uncharacterized protein. (596 aa)

Your Current Organism:

Opisthorchis viverrini

NCBI taxonomy Id: 6198
Other names: O. viverrini, Southeast Asian liver fluke

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
T265_00035	T265_00352	A0A075ADF8	A0A075ACY7	Putative DNA-binding protein.	Uncharacterized protein.	0.836
T265_00035	T265_01099	A0A075ADF8	A0A075AJA0	Putative DNA-binding protein.	Uncharacterized protein.	0.791
T265_00035	T265_01116	A0A075ADF8	A0A075A3H9	Putative DNA-binding protein.	CBF domain-containing protein.	0.632
T265_00035	T265_01256	A0A075ADF8	A0A075A0A7	Putative DNA-binding protein.	Uncharacterized protein.	0.843
T265_00035	T265_02034	A0A075ADF8	A0A074ZWG8	Putative DNA-binding protein.	Ribosomal protein, L1P family.	0.980
T265_00035	T265_02429	A0A075ADF8	A0A074ZV90	Putative DNA-binding protein.	Brix domain-containing protein.	0.422
T265_00035	T265_03001	A0A075ADF8	A0A074ZXL5	Putative DNA-binding protein.	G domain-containing protein.	0.971
T265_00035	T265_03813	A0A075ADF8	A0A075A264	Putative DNA-binding protein.	Brix domain-containing protein.	0.974
T265_00035	T265_03943	A0A075ADF8	A0A074ZQQ1	Putative DNA-binding protein.	CBF domain-containing protein.	0.460
T265_00035	T265_04060	A0A075ADF8	A0A074ZPG6	Putative DNA-binding protein.	Uncharacterized protein.	0.468
T265_00035	T265_04171	A0A075ADF8	A0A074ZQ20	Putative DNA-binding protein.	CPL domain-containing protein.	0.969
T265_00035	T265_04395	A0A075ADF8	A0A074ZSP4	Putative DNA-binding protein.	Uncharacterized protein.	0.744
T265_00035	T265_04430	A0A075ADF8	A0A074ZN48	Putative DNA-binding protein.	Uncharacterized protein.	0.928
T265_00035	T265_04508	A0A075ADF8	A0A075AGH4	Putative DNA-binding protein.	Uncharacterized protein.	0.706
T265_00035	T265_04726	A0A075ADF8	A0A074ZYK6	Putative DNA-binding protein.	BOP1NT domain-containing protein.	0.974
T265_00035	T265_05076	A0A075ADF8	A0A074ZLS7	Putative DNA-binding protein.	WD_REPEATS_REGION domain-containing protein.	0.945
T265_00035	T265_05101	A0A075ADF8	A0A074ZXA0	Putative DNA-binding protein.	Uncharacterized protein; Belongs to the DEAD box helicase family.	0.668
T265_00035	T265_05191	A0A075ADF8	A0A074ZPU1	Putative DNA-binding protein.	Nucleolar GTP-binding protein 2; GTPase that associates with pre-60S ribosomal subunits in the nucleolus and is required for their nuclear export and maturation. Belongs to the TRAFAC class YlqF/YawG GTPase family. NOG2 subfamily.	0.991
T265_00035	T265_05415	A0A075ADF8	A0A074ZP62	Putative DNA-binding protein.	60S ribosomal export protein NMD3; Acts as an adapter for the XPO1/CRM1-mediated export of the 60S ribosomal subunit; Belongs to the NMD3 family.	0.998
T265_00035	T265_05829	A0A075ADF8	A0A074ZUL2	Putative DNA-binding protein.	TRASH domain-containing protein.	0.978