(30 nodes) Preribosome, large subunit precursor, and Ribosomal large subunit biogenesis network (Opisthorchis viverrini)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	T265_11214	Uncharacterized protein. (259 aa)
	T265_14797	Pescadillo homolog; Required for maturation of ribosomal RNAs and formation of the large ribosomal subunit; Belongs to the pescadillo family. (603 aa)
	T265_09154	Protein MAK16 homolog; Belongs to the MAK16 family. (314 aa)
	T265_11531	Ribosome assembly factor mrt4; Component of the ribosome assembly machinery. Nuclear paralog of the ribosomal protein P0, it binds pre-60S subunits at an early stage of assembly in the nucleolus, and is replaced by P0 in cytoplasmic pre-60S subunits and mature 80S ribosomes. (278 aa)
	T265_09511	Uncharacterized protein. (624 aa)
	T265_08726	SURF6 domain-containing protein. (364 aa)
	T265_14631	PUA domain-containing protein. (249 aa)
	T265_14190	Uncharacterized protein. (443 aa)
	T265_07287	CP-type G domain-containing protein. (768 aa)
	T265_14014	RRM domain-containing protein. (297 aa)
	T265_06303	Uncharacterized protein. (204 aa)
	T265_06258	Putative rRNA methyltransferase; Probable methyltransferase involved in the maturation of rRNA and in the biogenesis of ribosomal subunits. (1038 aa)
	T265_05076	WD_REPEATS_REGION domain-containing protein. (335 aa)
	T265_06003	Uncharacterized protein. (319 aa)
	T265_13481	RNA helicase. (624 aa)
	T265_05191	Nucleolar GTP-binding protein 2; GTPase that associates with pre-60S ribosomal subunits in the nucleolus and is required for their nuclear export and maturation. Belongs to the TRAFAC class YlqF/YawG GTPase family. NOG2 subfamily. (620 aa)
	T265_04171	CPL domain-containing protein. (600 aa)
	T265_07131	Nucleolar GTP-binding protein 1; Involved in the biogenesis of the 60S ribosomal subunit. Belongs to the TRAFAC class OBG-HflX-like GTPase superfamily. OBG GTPase family. NOG subfamily. (688 aa)
	T265_03943	CBF domain-containing protein. (888 aa)
	T265_05829	TRASH domain-containing protein. (196 aa)
	T265_12095	Uncharacterized protein. (226 aa)
	T265_02429	Brix domain-containing protein. (1251 aa)
	T265_02034	Ribosomal protein, L1P family. (320 aa)
	T265_04726	BOP1NT domain-containing protein. (2089 aa)
	T265_10945	WD_REPEATS_REGION domain-containing protein. (493 aa)
	T265_10951	Brix domain-containing protein. (322 aa)
	T265_01256	Uncharacterized protein. (800 aa)
	T265_03813	Brix domain-containing protein. (363 aa)
	T265_00352	Uncharacterized protein. (321 aa)
	T265_01099	Uncharacterized protein. (596 aa)

Your Current Organism:

Opisthorchis viverrini

NCBI taxonomy Id: 6198
Other names: O. viverrini, Southeast Asian liver fluke

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
T265_00352	T265_01099	A0A075ACY7	A0A075AJA0	Uncharacterized protein.	Uncharacterized protein.	0.924
T265_00352	T265_01256	A0A075ACY7	A0A075A0A7	Uncharacterized protein.	Uncharacterized protein.	0.777
T265_00352	T265_02034	A0A075ACY7	A0A074ZWG8	Uncharacterized protein.	Ribosomal protein, L1P family.	0.938
T265_00352	T265_02429	A0A075ACY7	A0A074ZV90	Uncharacterized protein.	Brix domain-containing protein.	0.875
T265_00352	T265_03813	A0A075ACY7	A0A075A264	Uncharacterized protein.	Brix domain-containing protein.	0.956
T265_00352	T265_03943	A0A075ACY7	A0A074ZQQ1	Uncharacterized protein.	CBF domain-containing protein.	0.859
T265_00352	T265_04171	A0A075ACY7	A0A074ZQ20	Uncharacterized protein.	CPL domain-containing protein.	0.589
T265_00352	T265_04726	A0A075ACY7	A0A074ZYK6	Uncharacterized protein.	BOP1NT domain-containing protein.	0.984
T265_00352	T265_05076	A0A075ACY7	A0A074ZLS7	Uncharacterized protein.	WD_REPEATS_REGION domain-containing protein.	0.975
T265_00352	T265_05191	A0A075ACY7	A0A074ZPU1	Uncharacterized protein.	Nucleolar GTP-binding protein 2; GTPase that associates with pre-60S ribosomal subunits in the nucleolus and is required for their nuclear export and maturation. Belongs to the TRAFAC class YlqF/YawG GTPase family. NOG2 subfamily.	0.874
T265_00352	T265_05829	A0A075ACY7	A0A074ZUL2	Uncharacterized protein.	TRASH domain-containing protein.	0.953
T265_00352	T265_06003	A0A075ACY7	A0A074ZM75	Uncharacterized protein.	Uncharacterized protein.	0.965
T265_00352	T265_06258	A0A075ACY7	A0A074ZL77	Uncharacterized protein.	Putative rRNA methyltransferase; Probable methyltransferase involved in the maturation of rRNA and in the biogenesis of ribosomal subunits.	0.960
T265_00352	T265_06303	A0A075ACY7	A0A074ZKY6	Uncharacterized protein.	Uncharacterized protein.	0.909
T265_00352	T265_07131	A0A075ACY7	A0A074ZQ39	Uncharacterized protein.	Nucleolar GTP-binding protein 1; Involved in the biogenesis of the 60S ribosomal subunit. Belongs to the TRAFAC class OBG-HflX-like GTPase superfamily. OBG GTPase family. NOG subfamily.	0.964
T265_00352	T265_07287	A0A075ACY7	A0A074ZHJ7	Uncharacterized protein.	CP-type G domain-containing protein.	0.925
T265_00352	T265_08726	A0A075ACY7	A0A074ZCQ3	Uncharacterized protein.	SURF6 domain-containing protein.	0.795
T265_00352	T265_09154	A0A075ACY7	A0A074Z6K5	Uncharacterized protein.	Protein MAK16 homolog; Belongs to the MAK16 family.	0.947
T265_00352	T265_09511	A0A075ACY7	A0A074Z9Z4	Uncharacterized protein.	Uncharacterized protein.	0.607
T265_00352	T265_10945	A0A075ACY7	A0A074ZZA9	Uncharacterized protein.	WD_REPEATS_REGION domain-containing protein.	0.760