11 items (Opisthorchis viverrini) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	T265_12068	Uncharacterized protein; Belongs to the protein disulfide isomerase family. (433 aa)
	T265_11723	Calreticulin. (416 aa)
	T265_15627	Uncharacterized protein. (594 aa)
	T265_08783	Gal_mutarotas_2 domain-containing protein; Belongs to the glycosyl hydrolase 31 family. (1075 aa)
	T265_07297	Uncharacterized protein. (415 aa)
	T265_09820	Uncharacterized protein. (576 aa)
	T265_06975	Protein disulfide-isomerase. (484 aa)
	T265_02164	Endoplasmic reticulum protein ERp29 domain protein. (256 aa)
	T265_15515	HATPase_c domain-containing protein. (2845 aa)
	T265_12601	Protein disulfide-isomerase. (611 aa)
	T265_00067	Uncharacterized protein. (1724 aa)

Your Current Organism:

Opisthorchis viverrini

NCBI taxonomy Id: 6198
Other names: O. viverrini, Southeast Asian liver fluke

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
T265_00067	T265_07297	A0A075ADH5	A0A074ZDF2	Uncharacterized protein.	Uncharacterized protein.	0.557
T265_00067	T265_08783	A0A075ADH5	A0A074Z864	Uncharacterized protein.	Gal_mutarotas_2 domain-containing protein; Belongs to the glycosyl hydrolase 31 family.	0.781
T265_00067	T265_09820	A0A075ADH5	A0A074ZFH6	Uncharacterized protein.	Uncharacterized protein.	0.453
T265_00067	T265_11723	A0A075ADH5	A0A074YXY7	Uncharacterized protein.	Calreticulin.	0.705
T265_00067	T265_12068	A0A075ADH5	A0A074YW35	Uncharacterized protein.	Uncharacterized protein; Belongs to the protein disulfide isomerase family.	0.465
T265_00067	T265_15515	A0A075ADH5	A0A074ZWE7	Uncharacterized protein.	HATPase_c domain-containing protein.	0.573
T265_00067	T265_15627	A0A075ADH5	A0A074Z7K9	Uncharacterized protein.	Uncharacterized protein.	0.787
T265_02164	T265_06975	A0A074ZW63	A0A074ZQM0	Endoplasmic reticulum protein ERp29 domain protein.	Protein disulfide-isomerase.	0.919
T265_02164	T265_09820	A0A074ZW63	A0A074ZFH6	Endoplasmic reticulum protein ERp29 domain protein.	Uncharacterized protein.	0.914
T265_02164	T265_12068	A0A074ZW63	A0A074YW35	Endoplasmic reticulum protein ERp29 domain protein.	Uncharacterized protein; Belongs to the protein disulfide isomerase family.	0.928
T265_02164	T265_15515	A0A074ZW63	A0A074ZWE7	Endoplasmic reticulum protein ERp29 domain protein.	HATPase_c domain-containing protein.	0.544
T265_06975	T265_02164	A0A074ZQM0	A0A074ZW63	Protein disulfide-isomerase.	Endoplasmic reticulum protein ERp29 domain protein.	0.919
T265_06975	T265_08783	A0A074ZQM0	A0A074Z864	Protein disulfide-isomerase.	Gal_mutarotas_2 domain-containing protein; Belongs to the glycosyl hydrolase 31 family.	0.641
T265_06975	T265_09820	A0A074ZQM0	A0A074ZFH6	Protein disulfide-isomerase.	Uncharacterized protein.	0.991
T265_06975	T265_11723	A0A074ZQM0	A0A074YXY7	Protein disulfide-isomerase.	Calreticulin.	0.926
T265_06975	T265_12068	A0A074ZQM0	A0A074YW35	Protein disulfide-isomerase.	Uncharacterized protein; Belongs to the protein disulfide isomerase family.	0.966
T265_06975	T265_15515	A0A074ZQM0	A0A074ZWE7	Protein disulfide-isomerase.	HATPase_c domain-containing protein.	0.749
T265_06975	T265_15627	A0A074ZQM0	A0A074Z7K9	Protein disulfide-isomerase.	Uncharacterized protein.	0.881
T265_07297	T265_00067	A0A074ZDF2	A0A075ADH5	Uncharacterized protein.	Uncharacterized protein.	0.557
T265_07297	T265_08783	A0A074ZDF2	A0A074Z864	Uncharacterized protein.	Gal_mutarotas_2 domain-containing protein; Belongs to the glycosyl hydrolase 31 family.	0.999