(40 nodes) Zinc finger C2H2 superfamily, and Ligand-receptor interactions network (Opisthorchis viverrini)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	T265_15650	Uncharacterized protein. (382 aa)
	T265_11567	Uncharacterized protein. (556 aa)
	T265_15962	Uncharacterized protein. (210 aa)
	T265_09730	Uncharacterized protein. (384 aa)
	T265_08330	Uncharacterized protein. (440 aa)
	T265_08200	HintN domain-containing protein. (667 aa)
	T265_09119	Uncharacterized protein. (397 aa)
	T265_06412	Uncharacterized protein. (660 aa)
	T265_14352	Uncharacterized protein. (1971 aa)
	T265_04591	Zinc finger, C2H2 type. (373 aa)
	T265_04527	Uncharacterized protein. (291 aa)
	T265_04347	Uncharacterized protein. (372 aa)
	T265_04314	Uncharacterized protein. (395 aa)
	T265_04072	Uncharacterized protein. (213 aa)
	T265_07262	Cullin family protein; Belongs to the cullin family. (822 aa)
	T265_03639	Uncharacterized protein. (561 aa)
	T265_14068	Uncharacterized protein. (589 aa)
	T265_06231	Uncharacterized protein. (204 aa)
	T265_13074	Zinc finger, C2H2 type. (296 aa)
	T265_02221	Uncharacterized protein. (623 aa)
	T265_13762	Uncharacterized protein. (1675 aa)
	T265_03041	Uncharacterized protein. (601 aa)
	T265_05061	Uncharacterized protein. (255 aa)
	T265_01773	Uncharacterized protein. (819 aa)
	T265_13060	Uncharacterized protein. (664 aa)
	T265_10860	FZ domain-containing protein; Belongs to the G-protein coupled receptor Fz/Smo family. (1980 aa)
	T265_04436	SSD domain-containing protein. (1987 aa)
	T265_12908	Protein kinase domain-containing protein. (1745 aa)
	T265_03732	Uncharacterized protein. (252 aa)
	T265_01254	Suppressor of fused protein. (977 aa)
	T265_09533	Uncharacterized protein. (283 aa)
	T265_02933	Uncharacterized protein. (699 aa)
	T265_00211	Uncharacterized protein. (603 aa)
	T265_00279	Uncharacterized protein. (633 aa)
	T265_08351	Uncharacterized protein. (294 aa)
	T265_12758	NCD2 domain-containing protein. (503 aa)
	T265_00397	Uncharacterized protein. (324 aa)
	T265_03935	Uncharacterized protein. (440 aa)
	T265_01746	Uncharacterized protein. (1777 aa)
	T265_12757	Uncharacterized protein. (154 aa)

Your Current Organism:

Opisthorchis viverrini

NCBI taxonomy Id: 6198
Other names: O. viverrini, Southeast Asian liver fluke

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TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
T265_00211	T265_01254	A0A075A6M1	A0A075A3E2	Uncharacterized protein.	Suppressor of fused protein.	0.958
T265_00211	T265_01773	A0A075A6M1	A0A074ZXK5	Uncharacterized protein.	Uncharacterized protein.	0.894
T265_00211	T265_04436	A0A075A6M1	A0A074ZZU8	Uncharacterized protein.	SSD domain-containing protein.	0.698
T265_00211	T265_07262	A0A075A6M1	A0A074ZPH9	Uncharacterized protein.	Cullin family protein; Belongs to the cullin family.	0.674
T265_00211	T265_08200	A0A075A6M1	A0A074ZAB9	Uncharacterized protein.	HintN domain-containing protein.	0.579
T265_00211	T265_10860	A0A075A6M1	A0A074ZZP7	Uncharacterized protein.	FZ domain-containing protein; Belongs to the G-protein coupled receptor Fz/Smo family.	0.763
T265_00211	T265_12908	A0A075A6M1	A0A075A0L3	Uncharacterized protein.	Protein kinase domain-containing protein.	0.776
T265_00211	T265_15650	A0A075A6M1	A0A074YWS8	Uncharacterized protein.	Uncharacterized protein.	0.419
T265_00279	T265_04314	A0A075A6W0	A0A074ZP74	Uncharacterized protein.	Uncharacterized protein.	0.423
T265_00397	T265_01773	A0A075ACP5	A0A074ZXK5	Uncharacterized protein.	Uncharacterized protein.	0.400
T265_01254	T265_00211	A0A075A3E2	A0A075A6M1	Suppressor of fused protein.	Uncharacterized protein.	0.958
T265_01254	T265_01746	A0A075A3E2	A0A075AIS1	Suppressor of fused protein.	Uncharacterized protein.	0.897
T265_01254	T265_01773	A0A075A3E2	A0A074ZXK5	Suppressor of fused protein.	Uncharacterized protein.	0.522
T265_01254	T265_02221	A0A075A3E2	A0A074ZVU3	Suppressor of fused protein.	Uncharacterized protein.	0.463
T265_01254	T265_02933	A0A075A3E2	A0A075A548	Suppressor of fused protein.	Uncharacterized protein.	0.463
T265_01254	T265_03639	A0A075A3E2	A0A074ZRV8	Suppressor of fused protein.	Uncharacterized protein.	0.463
T265_01254	T265_03732	A0A075A3E2	A0A075A2G7	Suppressor of fused protein.	Uncharacterized protein.	0.463
T265_01254	T265_04072	A0A075A3E2	A0A074ZP93	Suppressor of fused protein.	Uncharacterized protein.	0.463
T265_01254	T265_04314	A0A075A3E2	A0A074ZP74	Suppressor of fused protein.	Uncharacterized protein.	0.463
T265_01254	T265_04347	A0A075A3E2	A0A074ZP32	Suppressor of fused protein.	Uncharacterized protein.	0.463