(13 nodes) Mixed, incl. U1 snRNP, and PRP38 family network (Opisthorchis viverrini)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	T265_15093	Protein kinase domain-containing protein. (735 aa)
	T265_08601	Uncharacterized protein. (1717 aa)
	T265_08399	WW domain-containing protein. (1101 aa)
	T265_09146	Uncharacterized protein. (373 aa)
	T265_07844	Uncharacterized protein. (988 aa)
	T265_06836	Uncharacterized protein. (462 aa)
	T265_06520	C3H1-type domain-containing protein. (253 aa)
	T265_14346	FF domain protein. (782 aa)
	T265_03536	Uncharacterized protein. (312 aa)
	T265_13150	Uncharacterized protein. (887 aa)
	T265_00504	RRM domain-containing protein. (303 aa)
	T265_14079	Uncharacterized protein. (339 aa)
	T265_05249	Uncharacterized protein. (363 aa)

Your Current Organism:

Opisthorchis viverrini

NCBI taxonomy Id: 6198
Other names: O. viverrini, Southeast Asian liver fluke

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structured XML interaction data, according to the 'PSI-MI' data standard

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a flat-file format describing the coordinates and colors of nodes in the network

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
T265_00504	T265_05249	A0A075A5N3	A0A075AFH9	RRM domain-containing protein.	Uncharacterized protein.	0.925
T265_00504	T265_06520	A0A075A5N3	A0A074ZG61	RRM domain-containing protein.	C3H1-type domain-containing protein.	0.415
T265_00504	T265_06836	A0A075A5N3	A0A074ZET3	RRM domain-containing protein.	Uncharacterized protein.	0.402
T265_00504	T265_07844	A0A075A5N3	A0A074ZBG5	RRM domain-containing protein.	Uncharacterized protein.	0.820
T265_00504	T265_08399	A0A075A5N3	A0A074Z9A2	RRM domain-containing protein.	WW domain-containing protein.	0.706
T265_00504	T265_08601	A0A075A5N3	A0A074Z8H4	RRM domain-containing protein.	Uncharacterized protein.	0.925
T265_00504	T265_09146	A0A075A5N3	A0A074ZB88	RRM domain-containing protein.	Uncharacterized protein.	0.806
T265_00504	T265_13150	A0A075A5N3	A0A074ZX74	RRM domain-containing protein.	Uncharacterized protein.	0.522
T265_00504	T265_14079	A0A075A5N3	A0A075ADI8	RRM domain-containing protein.	Uncharacterized protein.	0.771
T265_00504	T265_14346	A0A075A5N3	A0A074ZN51	RRM domain-containing protein.	FF domain protein.	0.809
T265_00504	T265_15093	A0A075A5N3	A0A074Z360	RRM domain-containing protein.	Protein kinase domain-containing protein.	0.404
T265_03536	T265_08601	A0A074ZRA8	A0A074Z8H4	Uncharacterized protein.	Uncharacterized protein.	0.692
T265_03536	T265_14079	A0A074ZRA8	A0A075ADI8	Uncharacterized protein.	Uncharacterized protein.	0.623
T265_03536	T265_15093	A0A074ZRA8	A0A074Z360	Uncharacterized protein.	Protein kinase domain-containing protein.	0.503
T265_05249	T265_00504	A0A075AFH9	A0A075A5N3	Uncharacterized protein.	RRM domain-containing protein.	0.925
T265_05249	T265_06520	A0A075AFH9	A0A074ZG61	Uncharacterized protein.	C3H1-type domain-containing protein.	0.635
T265_05249	T265_06836	A0A075AFH9	A0A074ZET3	Uncharacterized protein.	Uncharacterized protein.	0.743
T265_05249	T265_07844	A0A075AFH9	A0A074ZBG5	Uncharacterized protein.	Uncharacterized protein.	0.927
T265_05249	T265_08399	A0A075AFH9	A0A074Z9A2	Uncharacterized protein.	WW domain-containing protein.	0.650
T265_05249	T265_08601	A0A075AFH9	A0A074Z8H4	Uncharacterized protein.	Uncharacterized protein.	0.998