(50 nodes) RNA-binding domain superfamily, and Cold-shock (CSD) domain network (Opisthorchis viverrini)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	T265_16318	RanBP2-type domain-containing protein. (69 aa)
	T265_12071	RRM domain-containing protein. (77 aa)
	T265_11861	RRM domain-containing protein. (723 aa)
	T265_15424	Uncharacterized protein. (575 aa)
	T265_09985	Uncharacterized protein. (177 aa)
	T265_10152	OCRE domain-containing protein. (596 aa)
	T265_09986	Uncharacterized protein. (526 aa)
	T265_11733	Uncharacterized protein. (757 aa)
	T265_10677	Uncharacterized protein. (417 aa)
	T265_10364	Uncharacterized protein. (483 aa)
	T265_14223	RanBP2-type domain-containing protein. (443 aa)
	T265_14198	CSD_1 domain-containing protein. (216 aa)
	T265_06467	Uncharacterized protein. (610 aa)
	T265_06433	U2 snRNP auxiliary factor large subunit; Necessary for the splicing of pre-mRNA. Belongs to the splicing factor SR family. (576 aa)
	T265_05632	Uncharacterized protein. (619 aa)
	T265_06807	Uncharacterized protein. (362 aa)
	T265_06653	Uncharacterized protein. (260 aa)
	T265_05605	Uncharacterized protein. (590 aa)
	T265_06215	RRM domain-containing protein. (197 aa)
	T265_05953	Protein kinase domain-containing protein. (1270 aa)
	T265_04787	Uncharacterized protein. (416 aa)
	T265_03821	RRM domain-containing protein. (597 aa)
	T265_04982	Uncharacterized protein. (889 aa)
	T265_13283	Uncharacterized protein. (722 aa)
	T265_13252	Uncharacterized protein. (358 aa)
	T265_03415	SAP domain protein. (1392 aa)
	T265_06248	CSD_1 domain-containing protein. (480 aa)
	T265_02943	Uncharacterized protein. (675 aa)
	T265_02620	Uncharacterized protein. (464 aa)
	T265_02342	Uncharacterized protein. (1184 aa)
	T265_13784	Uncharacterized protein. (1448 aa)
	T265_02016	Uncharacterized protein. (770 aa)
	T265_02271	RRM domain-containing protein. (157 aa)
	T265_05290	Uncharacterized protein. (340 aa)
	T265_02298	CSD_1 domain-containing protein. (471 aa)
	T265_11402	Uncharacterized protein. (251 aa)
	T265_04980	Uncharacterized protein. (1032 aa)
	T265_01927	Uncharacterized protein. (262 aa)
	T265_01555	Uncharacterized protein. (1027 aa)
	T265_04488	Uncharacterized protein. (434 aa)
	T265_12920	Uncharacterized protein. (629 aa)
	T265_01574	Uncharacterized protein. (610 aa)
	T265_10181	RRM domain-containing protein. (339 aa)
	T265_13237	Uncharacterized protein. (178 aa)
	T265_00497	Uncharacterized protein. (151 aa)
	T265_02698	Uncharacterized protein. (96 aa)
	T265_09022	Uncharacterized protein. (1284 aa)
	T265_07370	RRM domain-containing protein. (284 aa)
	T265_00005	Uncharacterized protein. (240 aa)
	T265_03594	Uncharacterized protein. (487 aa)

Your Current Organism:

Opisthorchis viverrini

NCBI taxonomy Id: 6198
Other names: O. viverrini, Southeast Asian liver fluke

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
T265_00005	T265_00497	A0A075ADC3	A0A075A5M2	Uncharacterized protein.	Uncharacterized protein.	0.404
T265_00005	T265_01555	A0A075ADC3	A0A074ZZ18	Uncharacterized protein.	Uncharacterized protein.	0.403
T265_00005	T265_01927	A0A075ADC3	A0A074ZY38	Uncharacterized protein.	Uncharacterized protein.	0.448
T265_00005	T265_02342	A0A075ADC3	A0A074ZVE1	Uncharacterized protein.	Uncharacterized protein.	0.403
T265_00005	T265_03415	A0A075ADC3	A0A074ZSC0	Uncharacterized protein.	SAP domain protein.	0.452
T265_00005	T265_05605	A0A075ADC3	A0A074ZJY9	Uncharacterized protein.	Uncharacterized protein.	0.404
T265_00005	T265_06807	A0A075ADC3	A0A074ZJ89	Uncharacterized protein.	Uncharacterized protein.	0.455
T265_00005	T265_10677	A0A075ADC3	A0A074ZCE1	Uncharacterized protein.	Uncharacterized protein.	0.417
T265_00005	T265_12920	A0A075ADC3	A0A075A0E8	Uncharacterized protein.	Uncharacterized protein.	0.417
T265_00497	T265_00005	A0A075A5M2	A0A075ADC3	Uncharacterized protein.	Uncharacterized protein.	0.404
T265_00497	T265_01555	A0A075A5M2	A0A074ZZ18	Uncharacterized protein.	Uncharacterized protein.	0.470
T265_00497	T265_01574	A0A075A5M2	A0A075A271	Uncharacterized protein.	Uncharacterized protein.	0.534
T265_00497	T265_01927	A0A075A5M2	A0A074ZY38	Uncharacterized protein.	Uncharacterized protein.	0.997
T265_00497	T265_02016	A0A075A5M2	A0A074ZWE9	Uncharacterized protein.	Uncharacterized protein.	0.540
T265_00497	T265_02271	A0A075A5M2	A0A074ZWJ3	Uncharacterized protein.	RRM domain-containing protein.	0.721
T265_00497	T265_02298	A0A075A5M2	A0A074ZWN0	Uncharacterized protein.	CSD_1 domain-containing protein.	0.440
T265_00497	T265_02342	A0A075A5M2	A0A074ZVE1	Uncharacterized protein.	Uncharacterized protein.	0.470
T265_00497	T265_02620	A0A075A5M2	A0A074ZV91	Uncharacterized protein.	Uncharacterized protein.	0.496
T265_00497	T265_02698	A0A075A5M2	A0A075A5W8	Uncharacterized protein.	Uncharacterized protein.	0.930
T265_00497	T265_03415	A0A075A5M2	A0A074ZSC0	Uncharacterized protein.	SAP domain protein.	0.561