(18 nodes) Regulation of RNA splicing, and HnRNP R/Q splicing factor network (Opisthorchis viverrini)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	T265_16318	RanBP2-type domain-containing protein. (69 aa)
	T265_09985	Uncharacterized protein. (177 aa)
	T265_09986	Uncharacterized protein. (526 aa)
	T265_10677	Uncharacterized protein. (417 aa)
	T265_10364	Uncharacterized protein. (483 aa)
	T265_14223	RanBP2-type domain-containing protein. (443 aa)
	T265_05632	Uncharacterized protein. (619 aa)
	T265_03415	SAP domain protein. (1392 aa)
	T265_06248	CSD_1 domain-containing protein. (480 aa)
	T265_02342	Uncharacterized protein. (1184 aa)
	T265_02016	Uncharacterized protein. (770 aa)
	T265_05290	Uncharacterized protein. (340 aa)
	T265_01555	Uncharacterized protein. (1027 aa)
	T265_04488	Uncharacterized protein. (434 aa)
	T265_12920	Uncharacterized protein. (629 aa)
	T265_01574	Uncharacterized protein. (610 aa)
	T265_10181	RRM domain-containing protein. (339 aa)
	T265_13237	Uncharacterized protein. (178 aa)

Your Current Organism:

Opisthorchis viverrini

NCBI taxonomy Id: 6198
Other names: O. viverrini, Southeast Asian liver fluke

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
T265_01555	T265_01574	A0A074ZZ18	A0A075A271	Uncharacterized protein.	Uncharacterized protein.	0.456
T265_01555	T265_02016	A0A074ZZ18	A0A074ZWE9	Uncharacterized protein.	Uncharacterized protein.	0.503
T265_01555	T265_03415	A0A074ZZ18	A0A074ZSC0	Uncharacterized protein.	SAP domain protein.	0.610
T265_01555	T265_04488	A0A074ZZ18	A0A074ZZS7	Uncharacterized protein.	Uncharacterized protein.	0.560
T265_01555	T265_05290	A0A074ZZ18	A0A074ZWM1	Uncharacterized protein.	Uncharacterized protein.	0.605
T265_01555	T265_05632	A0A074ZZ18	A0A074ZJ01	Uncharacterized protein.	Uncharacterized protein.	0.456
T265_01555	T265_06248	A0A074ZZ18	A0A074ZT23	Uncharacterized protein.	CSD_1 domain-containing protein.	0.545
T265_01555	T265_09985	A0A074ZZ18	A0A074Z3T8	Uncharacterized protein.	Uncharacterized protein.	0.560
T265_01555	T265_09986	A0A074ZZ18	A0A074Z868	Uncharacterized protein.	Uncharacterized protein.	0.560
T265_01555	T265_10181	A0A074ZZ18	A0A075A288	Uncharacterized protein.	RRM domain-containing protein.	0.570
T265_01555	T265_10364	A0A074ZZ18	A0A074ZDK7	Uncharacterized protein.	Uncharacterized protein.	0.648
T265_01555	T265_10677	A0A074ZZ18	A0A074ZCE1	Uncharacterized protein.	Uncharacterized protein.	0.734
T265_01555	T265_12920	A0A074ZZ18	A0A075A0E8	Uncharacterized protein.	Uncharacterized protein.	0.651
T265_01555	T265_13237	A0A074ZZ18	A0A075A3L8	Uncharacterized protein.	Uncharacterized protein.	0.481
T265_01555	T265_14223	A0A074ZZ18	A0A074ZDY3	Uncharacterized protein.	RanBP2-type domain-containing protein.	0.639
T265_01555	T265_16318	A0A074ZZ18	A0A074YTE7	Uncharacterized protein.	RanBP2-type domain-containing protein.	0.539
T265_01574	T265_01555	A0A075A271	A0A074ZZ18	Uncharacterized protein.	Uncharacterized protein.	0.456
T265_01574	T265_02016	A0A075A271	A0A074ZWE9	Uncharacterized protein.	Uncharacterized protein.	0.566
T265_01574	T265_02342	A0A075A271	A0A074ZVE1	Uncharacterized protein.	Uncharacterized protein.	0.456
T265_01574	T265_03415	A0A075A271	A0A074ZSC0	Uncharacterized protein.	SAP domain protein.	0.565