(11 nodes) Mixed, incl. U2AF complex, and hSac2 domain network (Opisthorchis viverrini)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	T265_06467	Uncharacterized protein. (610 aa)
	T265_06433	U2 snRNP auxiliary factor large subunit; Necessary for the splicing of pre-mRNA. Belongs to the splicing factor SR family. (576 aa)
	T265_06807	Uncharacterized protein. (362 aa)
	T265_06653	Uncharacterized protein. (260 aa)
	T265_05605	Uncharacterized protein. (590 aa)
	T265_06215	RRM domain-containing protein. (197 aa)
	T265_04787	Uncharacterized protein. (416 aa)
	T265_01927	Uncharacterized protein. (262 aa)
	T265_00497	Uncharacterized protein. (151 aa)
	T265_02698	Uncharacterized protein. (96 aa)
	T265_07370	RRM domain-containing protein. (284 aa)

Your Current Organism:

Opisthorchis viverrini

NCBI taxonomy Id: 6198
Other names: O. viverrini, Southeast Asian liver fluke

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
T265_00497	T265_01927	A0A075A5M2	A0A074ZY38	Uncharacterized protein.	Uncharacterized protein.	0.997
T265_00497	T265_02698	A0A075A5M2	A0A075A5W8	Uncharacterized protein.	Uncharacterized protein.	0.930
T265_00497	T265_04787	A0A075A5M2	A0A074ZMK0	Uncharacterized protein.	Uncharacterized protein.	0.977
T265_00497	T265_06215	A0A075A5M2	A0A074ZLA8	Uncharacterized protein.	RRM domain-containing protein.	0.992
T265_00497	T265_06433	A0A075A5M2	A0A074ZGI3	Uncharacterized protein.	U2 snRNP auxiliary factor large subunit; Necessary for the splicing of pre-mRNA. Belongs to the splicing factor SR family.	0.847
T265_00497	T265_06467	A0A075A5M2	A0A074ZGE1	Uncharacterized protein.	Uncharacterized protein.	0.841
T265_00497	T265_06653	A0A075A5M2	A0A074ZJQ7	Uncharacterized protein.	Uncharacterized protein.	0.764
T265_00497	T265_06807	A0A075A5M2	A0A074ZJ89	Uncharacterized protein.	Uncharacterized protein.	0.728
T265_00497	T265_07370	A0A075A5M2	A0A075ABY3	Uncharacterized protein.	RRM domain-containing protein.	0.935
T265_01927	T265_00497	A0A074ZY38	A0A075A5M2	Uncharacterized protein.	Uncharacterized protein.	0.997
T265_01927	T265_02698	A0A074ZY38	A0A075A5W8	Uncharacterized protein.	Uncharacterized protein.	0.980
T265_01927	T265_04787	A0A074ZY38	A0A074ZMK0	Uncharacterized protein.	Uncharacterized protein.	0.980
T265_01927	T265_05605	A0A074ZY38	A0A074ZJY9	Uncharacterized protein.	Uncharacterized protein.	0.862
T265_01927	T265_06215	A0A074ZY38	A0A074ZLA8	Uncharacterized protein.	RRM domain-containing protein.	0.994
T265_01927	T265_06433	A0A074ZY38	A0A074ZGI3	Uncharacterized protein.	U2 snRNP auxiliary factor large subunit; Necessary for the splicing of pre-mRNA. Belongs to the splicing factor SR family.	0.945
T265_01927	T265_06467	A0A074ZY38	A0A074ZGE1	Uncharacterized protein.	Uncharacterized protein.	0.821
T265_01927	T265_06653	A0A074ZY38	A0A074ZJQ7	Uncharacterized protein.	Uncharacterized protein.	0.888
T265_01927	T265_06807	A0A074ZY38	A0A074ZJ89	Uncharacterized protein.	Uncharacterized protein.	0.834
T265_01927	T265_07370	A0A074ZY38	A0A075ABY3	Uncharacterized protein.	RRM domain-containing protein.	0.950
T265_02698	T265_00497	A0A075A5W8	A0A075A5M2	Uncharacterized protein.	Uncharacterized protein.	0.930