(5 nodes) Mixed, incl. Negative regulation of mRNA processing, and Positive regulation of mRNA splicing, via spliceosome network (Opisthorchis viverrini)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	T265_06215	RRM domain-containing protein. (197 aa)
	T265_04787	Uncharacterized protein. (416 aa)
	T265_01927	Uncharacterized protein. (262 aa)
	T265_00497	Uncharacterized protein. (151 aa)
	T265_07370	RRM domain-containing protein. (284 aa)

Your Current Organism:

Opisthorchis viverrini

NCBI taxonomy Id: 6198
Other names: O. viverrini, Southeast Asian liver fluke

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
T265_00497	T265_01927	A0A075A5M2	A0A074ZY38	Uncharacterized protein.	Uncharacterized protein.	0.997
T265_00497	T265_04787	A0A075A5M2	A0A074ZMK0	Uncharacterized protein.	Uncharacterized protein.	0.977
T265_00497	T265_06215	A0A075A5M2	A0A074ZLA8	Uncharacterized protein.	RRM domain-containing protein.	0.992
T265_00497	T265_07370	A0A075A5M2	A0A075ABY3	Uncharacterized protein.	RRM domain-containing protein.	0.935
T265_01927	T265_00497	A0A074ZY38	A0A075A5M2	Uncharacterized protein.	Uncharacterized protein.	0.997
T265_01927	T265_04787	A0A074ZY38	A0A074ZMK0	Uncharacterized protein.	Uncharacterized protein.	0.980
T265_01927	T265_06215	A0A074ZY38	A0A074ZLA8	Uncharacterized protein.	RRM domain-containing protein.	0.994
T265_01927	T265_07370	A0A074ZY38	A0A075ABY3	Uncharacterized protein.	RRM domain-containing protein.	0.950
T265_04787	T265_00497	A0A074ZMK0	A0A075A5M2	Uncharacterized protein.	Uncharacterized protein.	0.977
T265_04787	T265_01927	A0A074ZMK0	A0A074ZY38	Uncharacterized protein.	Uncharacterized protein.	0.980
T265_04787	T265_06215	A0A074ZMK0	A0A074ZLA8	Uncharacterized protein.	RRM domain-containing protein.	0.976
T265_04787	T265_07370	A0A074ZMK0	A0A075ABY3	Uncharacterized protein.	RRM domain-containing protein.	0.942
T265_06215	T265_00497	A0A074ZLA8	A0A075A5M2	RRM domain-containing protein.	Uncharacterized protein.	0.992
T265_06215	T265_01927	A0A074ZLA8	A0A074ZY38	RRM domain-containing protein.	Uncharacterized protein.	0.994
T265_06215	T265_04787	A0A074ZLA8	A0A074ZMK0	RRM domain-containing protein.	Uncharacterized protein.	0.976
T265_06215	T265_07370	A0A074ZLA8	A0A075ABY3	RRM domain-containing protein.	RRM domain-containing protein.	0.902
T265_07370	T265_00497	A0A075ABY3	A0A075A5M2	RRM domain-containing protein.	Uncharacterized protein.	0.935
T265_07370	T265_01927	A0A075ABY3	A0A074ZY38	RRM domain-containing protein.	Uncharacterized protein.	0.950
T265_07370	T265_04787	A0A075ABY3	A0A074ZMK0	RRM domain-containing protein.	Uncharacterized protein.	0.942
T265_07370	T265_06215	A0A075ABY3	A0A074ZLA8	RRM domain-containing protein.	RRM domain-containing protein.	0.902