(37 nodes) Nuclear-transcribed mRNA catabolic process, nonsense-mediated decay, and mRNA 3-end processing network (Opisthorchis viverrini)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	T265_16321	SAP domain-containing protein. (48 aa)
	T265_15683	Uncharacterized protein. (287 aa)
	T265_15451	Smg4_UPF3 domain-containing protein. (650 aa)
	T265_15131	Arsenite-resistance protein 2. (1020 aa)
	T265_11153	Mago nashi protein. (102 aa)
	T265_09918	Mago-bind domain-containing protein. (328 aa)
	T265_10968	MIF4G domain-containing protein. (956 aa)
	T265_10864	Uncharacterized protein; Belongs to the DEAD box helicase family. (469 aa)
	T265_10157	HSac2 domain-containing protein. (255 aa)
	T265_11132	PWI domain-containing protein. (247 aa)
	T265_15203	WD_REPEATS_REGION domain-containing protein. (326 aa)
	T265_06548	Sin3 associated polypeptide p18. (234 aa)
	T265_09400	RRM domain-containing protein. (206 aa)
	T265_05848	Uncharacterized protein. (285 aa)
	T265_07856	RNA_GG_bind domain-containing protein. (346 aa)
	T265_06949	DEAD/DEAH box helicase. (426 aa)
	T265_13300	Uncharacterized protein. (73 aa)
	T265_03684	Uncharacterized protein. (1235 aa)
	T265_04671	Uncharacterized protein. (810 aa)
	T265_03538	Uncharacterized protein. (1064 aa)
	T265_06209	Uncharacterized protein; Belongs to the PI3/PI4-kinase family. (4263 aa)
	T265_02840	Uncharacterized protein. (1154 aa)
	T265_12978	Uncharacterized protein. (258 aa)
	T265_02354	Uncharacterized protein. (1461 aa)
	T265_03312	Uncharacterized protein. (1182 aa)
	T265_03246	Uncharacterized protein. (436 aa)
	T265_13168	Uncharacterized protein. (810 aa)
	T265_11300	Nuclear cap-binding protein subunit 2. (159 aa)
	T265_15313	RRM domain-containing protein. (273 aa)
	T265_04125	Uncharacterized protein. (1476 aa)
	T265_00505	Uncharacterized protein. (509 aa)
	T265_09338	Uncharacterized protein. (751 aa)
	T265_01304	Uncharacterized protein; Belongs to the DEAD box helicase family. (664 aa)
	T265_01122	RNA-binding protein 8A; Core component of the splicing-dependent multiprotein exon junction complex (EJC) deposited at splice junctions on mRNAs. (177 aa)
	T265_07692	RRM domain-containing protein. (324 aa)
	T265_00997	Btz domain-containing protein. (780 aa)
	T265_06752	Uncharacterized protein. (1534 aa)

Your Current Organism:

Opisthorchis viverrini

NCBI taxonomy Id: 6198
Other names: O. viverrini, Southeast Asian liver fluke

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structured XML interaction data, according to the 'PSI-MI' data standard

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
T265_00505	T265_03246	A0A075A1L3	A0A074ZWM2	Uncharacterized protein.	Uncharacterized protein.	0.529
T265_00505	T265_06949	A0A075A1L3	A0A074ZQR0	Uncharacterized protein.	DEAD/DEAH box helicase.	0.428
T265_00505	T265_07692	A0A075A1L3	A0A075AAW1	Uncharacterized protein.	RRM domain-containing protein.	0.403
T265_00505	T265_09338	A0A075A1L3	A0A075A5B6	Uncharacterized protein.	Uncharacterized protein.	0.449
T265_00505	T265_10968	A0A075A1L3	A0A074Z4P7	Uncharacterized protein.	MIF4G domain-containing protein.	0.761
T265_00505	T265_11300	A0A075A1L3	A0A074ZXY8	Uncharacterized protein.	Nuclear cap-binding protein subunit 2.	0.442
T265_00505	T265_12978	A0A075A1L3	A0A074ZWA5	Uncharacterized protein.	Uncharacterized protein.	0.450
T265_00505	T265_15313	A0A075A1L3	A0A074ZZ49	Uncharacterized protein.	RRM domain-containing protein.	0.403
T265_00997	T265_01122	A0A075ABA5	A0A075AAL2	Btz domain-containing protein.	RNA-binding protein 8A; Core component of the splicing-dependent multiprotein exon junction complex (EJC) deposited at splice junctions on mRNAs.	0.999
T265_00997	T265_01304	A0A075ABA5	A0A075AA29	Btz domain-containing protein.	Uncharacterized protein; Belongs to the DEAD box helicase family.	0.999
T265_00997	T265_02354	A0A075ABA5	A0A074ZWD1	Btz domain-containing protein.	Uncharacterized protein.	0.873
T265_00997	T265_02840	A0A075ABA5	A0A074ZUK6	Btz domain-containing protein.	Uncharacterized protein.	0.486
T265_00997	T265_03246	A0A075ABA5	A0A074ZWM2	Btz domain-containing protein.	Uncharacterized protein.	0.763
T265_00997	T265_03312	A0A075ABA5	A0A074ZWJ4	Btz domain-containing protein.	Uncharacterized protein.	0.483
T265_00997	T265_03684	A0A075ABA5	A0A074ZRQ8	Btz domain-containing protein.	Uncharacterized protein.	0.534
T265_00997	T265_04125	A0A075ABA5	A0A075A119	Btz domain-containing protein.	Uncharacterized protein.	0.974
T265_00997	T265_04671	A0A075ABA5	A0A074ZRT0	Btz domain-containing protein.	Uncharacterized protein.	0.688
T265_00997	T265_05848	A0A075ABA5	A0A074ZJ51	Btz domain-containing protein.	Uncharacterized protein.	0.669
T265_00997	T265_06209	A0A075ABA5	A0A074ZT60	Btz domain-containing protein.	Uncharacterized protein; Belongs to the PI3/PI4-kinase family.	0.461
T265_00997	T265_06548	A0A075ABA5	A0A074ZFS7	Btz domain-containing protein.	Sin3 associated polypeptide p18.	0.732