(11 nodes) Zinc finger C2H2 superfamily network (Opisthorchis viverrini)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	T265_15650	Uncharacterized protein. (382 aa)
	T265_11567	Uncharacterized protein. (556 aa)
	T265_15962	Uncharacterized protein. (210 aa)
	T265_06412	Uncharacterized protein. (660 aa)
	T265_04591	Zinc finger, C2H2 type. (373 aa)
	T265_04527	Uncharacterized protein. (291 aa)
	T265_04314	Uncharacterized protein. (395 aa)
	T265_02221	Uncharacterized protein. (623 aa)
	T265_03041	Uncharacterized protein. (601 aa)
	T265_00279	Uncharacterized protein. (633 aa)
	T265_03935	Uncharacterized protein. (440 aa)

Your Current Organism:

Opisthorchis viverrini

NCBI taxonomy Id: 6198
Other names: O. viverrini, Southeast Asian liver fluke

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TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
T265_00279	T265_04314	A0A075A6W0	A0A074ZP74	Uncharacterized protein.	Uncharacterized protein.	0.423
T265_03041	T265_04527	A0A074ZXA8	A0A074ZNR5	Uncharacterized protein.	Uncharacterized protein.	0.475
T265_03041	T265_15962	A0A074ZXA8	A0A074YZE3	Uncharacterized protein.	Uncharacterized protein.	0.434
T265_03935	T265_15650	A0A075AH89	A0A074YWS8	Uncharacterized protein.	Uncharacterized protein.	0.408
T265_04314	T265_00279	A0A074ZP74	A0A075A6W0	Uncharacterized protein.	Uncharacterized protein.	0.423
T265_04527	T265_03041	A0A074ZNR5	A0A074ZXA8	Uncharacterized protein.	Uncharacterized protein.	0.475
T265_11567	T265_15962	A0A074YY80	A0A074YZE3	Uncharacterized protein.	Uncharacterized protein.	0.454
T265_15650	T265_03935	A0A074YWS8	A0A075AH89	Uncharacterized protein.	Uncharacterized protein.	0.408
T265_15962	T265_03041	A0A074YZE3	A0A074ZXA8	Uncharacterized protein.	Uncharacterized protein.	0.434
T265_15962	T265_11567	A0A074YZE3	A0A074YY80	Uncharacterized protein.	Uncharacterized protein.	0.454