(14 nodes) Mixed, incl. THO complex, and SERRATE/Ars2 network (Opisthorchis viverrini)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	T265_16321	SAP domain-containing protein. (48 aa)
	T265_15683	Uncharacterized protein. (287 aa)
	T265_15131	Arsenite-resistance protein 2. (1020 aa)
	T265_10968	MIF4G domain-containing protein. (956 aa)
	T265_15203	WD_REPEATS_REGION domain-containing protein. (326 aa)
	T265_07856	RNA_GG_bind domain-containing protein. (346 aa)
	T265_06949	DEAD/DEAH box helicase. (426 aa)
	T265_13300	Uncharacterized protein. (73 aa)
	T265_03538	Uncharacterized protein. (1064 aa)
	T265_12978	Uncharacterized protein. (258 aa)
	T265_11300	Nuclear cap-binding protein subunit 2. (159 aa)
	T265_15313	RRM domain-containing protein. (273 aa)
	T265_09338	Uncharacterized protein. (751 aa)
	T265_07692	RRM domain-containing protein. (324 aa)

Your Current Organism:

Opisthorchis viverrini

NCBI taxonomy Id: 6198
Other names: O. viverrini, Southeast Asian liver fluke

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
T265_03538	T265_06949	A0A074ZS37	A0A074ZQR0	Uncharacterized protein.	DEAD/DEAH box helicase.	0.778
T265_03538	T265_07692	A0A074ZS37	A0A075AAW1	Uncharacterized protein.	RRM domain-containing protein.	0.666
T265_03538	T265_07856	A0A074ZS37	A0A074ZM90	Uncharacterized protein.	RNA_GG_bind domain-containing protein.	0.813
T265_03538	T265_10968	A0A074ZS37	A0A074Z4P7	Uncharacterized protein.	MIF4G domain-containing protein.	0.969
T265_03538	T265_11300	A0A074ZS37	A0A074ZXY8	Uncharacterized protein.	Nuclear cap-binding protein subunit 2.	0.962
T265_03538	T265_15313	A0A074ZS37	A0A074ZZ49	Uncharacterized protein.	RRM domain-containing protein.	0.666
T265_06949	T265_03538	A0A074ZQR0	A0A074ZS37	DEAD/DEAH box helicase.	Uncharacterized protein.	0.778
T265_06949	T265_07692	A0A074ZQR0	A0A075AAW1	DEAD/DEAH box helicase.	RRM domain-containing protein.	0.976
T265_06949	T265_09338	A0A074ZQR0	A0A075A5B6	DEAD/DEAH box helicase.	Uncharacterized protein.	0.974
T265_06949	T265_10968	A0A074ZQR0	A0A074Z4P7	DEAD/DEAH box helicase.	MIF4G domain-containing protein.	0.874
T265_06949	T265_11300	A0A074ZQR0	A0A074ZXY8	DEAD/DEAH box helicase.	Nuclear cap-binding protein subunit 2.	0.894
T265_06949	T265_12978	A0A074ZQR0	A0A074ZWA5	DEAD/DEAH box helicase.	Uncharacterized protein.	0.998
T265_06949	T265_13300	A0A074ZQR0	A0A074ZR15	DEAD/DEAH box helicase.	Uncharacterized protein.	0.972
T265_06949	T265_15131	A0A074ZQR0	A0A074Z2S9	DEAD/DEAH box helicase.	Arsenite-resistance protein 2.	0.841
T265_06949	T265_15203	A0A074ZQR0	A0A074ZCL4	DEAD/DEAH box helicase.	WD_REPEATS_REGION domain-containing protein.	0.945
T265_06949	T265_15313	A0A074ZQR0	A0A074ZZ49	DEAD/DEAH box helicase.	RRM domain-containing protein.	0.999
T265_06949	T265_15683	A0A074ZQR0	A0A074Z0Q5	DEAD/DEAH box helicase.	Uncharacterized protein.	0.962
T265_06949	T265_16321	A0A074ZQR0	A0A074YXZ9	DEAD/DEAH box helicase.	SAP domain-containing protein.	0.962
T265_07692	T265_03538	A0A075AAW1	A0A074ZS37	RRM domain-containing protein.	Uncharacterized protein.	0.666
T265_07692	T265_06949	A0A075AAW1	A0A074ZQR0	RRM domain-containing protein.	DEAD/DEAH box helicase.	0.976