105 items (Opisthorchis viverrini) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	T265_10644	RING-type domain-containing protein. (812 aa)
	T265_12207	Uncharacterized protein. (133 aa)
	T265_16096	BACK domain-containing protein. (165 aa)
	T265_15506	CULLIN_2 domain-containing protein; Belongs to the cullin family. (810 aa)
	T265_11750	Uncharacterized protein. (1518 aa)
	T265_11722	Uncharacterized protein. (204 aa)
	T265_11921	U-box domain-containing protein. (1154 aa)
	T265_12754	RING-type domain-containing protein. (244 aa)
	T265_13695	TPR_REGION domain-containing protein. (775 aa)
	T265_05464	Cyclin-dependent kinases regulatory subunit; Binds to the catalytic subunit of the cyclin dependent kinases and is essential for their biological function. (128 aa)
	T265_05946	F-box domain-containing protein. (1044 aa)
	T265_06186	F-box domain-containing protein. (1003 aa)
	T265_14053	BTB domain-containing protein. (505 aa)
	T265_12422	Uncharacterized protein. (937 aa)
	T265_07666	ANAPC4_WD40 domain-containing protein. (554 aa)
	T265_01771	Uncharacterized protein. (587 aa)
	T265_01847	Uncharacterized protein. (647 aa)
	T265_14565	F-box domain-containing protein. (516 aa)
	T265_01998	SEC7 domain-containing protein. (182 aa)
	T265_12438	Uncharacterized protein. (889 aa)
	T265_02400	Uncharacterized protein. (329 aa)
	T265_00388	Uncharacterized protein. (420 aa)
	T265_09002	Derlin; May be involved in the degradation of misfolded endoplasmic reticulum (ER) luminal proteins; Belongs to the derlin family. (225 aa)
	T265_00286	Zinc finger, C3HC4 type. (560 aa)
	T265_00576	Uncharacterized protein. (116 aa)
	T265_00551	F-box domain-containing protein. (486 aa)
	T265_12595	WD domain, G-beta repeat protein. (835 aa)
	T265_00626	Zf-rbx1 domain-containing protein. (332 aa)
	T265_02921	Uncharacterized protein. (674 aa)
	T265_00723	Uncharacterized protein. (820 aa)
	T265_12616	CTLH domain-containing protein. (475 aa)
	T265_09488	Uncharacterized protein. (226 aa)
	T265_01035	DNA repair protein RAD51 homolog; Binds to single and double-stranded DNA and exhibits DNA- dependent ATPase activity. Underwinds duplex DNA. Belongs to the RecA family. RAD51 subfamily. (365 aa)
	T265_00329	ANK_REP_REGION domain-containing protein. (721 aa)
	T265_13254	E3 ubiquitin-protein ligase; Ubiquitin ligase protein which is a component of the N-end rule pathway. Recognizes and binds to proteins bearing specific N- terminal residues that are destabilizing according to the N-end rule, leading to their ubiquitination and subsequent degradation. (2824 aa)
	T265_00550	F-box domain-containing protein. (461 aa)
	T265_03542	U-box domain-containing protein. (1157 aa)
	T265_03823	Uncharacterized protein. (651 aa)
	T265_04067	RING-type domain-containing protein. (260 aa)
	T265_01934	CPSF_A domain-containing protein. (1330 aa)
	T265_01029	Kelch repeat protein. (357 aa)
	T265_02041	Uncharacterized protein. (1310 aa)
	T265_01323	CULLIN_2 domain-containing protein; Belongs to the cullin family. (966 aa)
	T265_04419	Autophagy-related protein 3. (379 aa)
	T265_04447	BTB domain-containing protein. (825 aa)
	T265_12753	Uncharacterized protein. (211 aa)
	T265_01440	RBR-type E3 ubiquitin transferase. (369 aa)
	T265_01606	RBR-type E3 ubiquitin transferase. (769 aa)
	T265_15392	Uncharacterized protein. (813 aa)
	T265_03111	Uncharacterized protein. (510 aa)
	T265_05240	Uncharacterized protein. (2897 aa)
	T265_02025	WD_REPEATS_REGION domain-containing protein. (1238 aa)
	T265_05368	Uncharacterized protein. (389 aa)
	T265_11781	RING-type domain-containing protein. (194 aa)
	T265_06111	RBR-type E3 ubiquitin transferase. (447 aa)
	T265_16002	Uncharacterized protein. (142 aa)
	T265_12451	UBIQUITIN_CONJUGAT_2 domain-containing protein; Belongs to the ubiquitin-conjugating enzyme family. (156 aa)
	T265_04298	CULLIN_2 domain-containing protein; Belongs to the cullin family. (737 aa)
	T265_06301	Uncharacterized protein. (2028 aa)
	T265_04450	UBIQUITIN_CONJUGAT_2 domain-containing protein; Belongs to the ubiquitin-conjugating enzyme family. (301 aa)
	T265_04792	CULLIN_2 domain-containing protein; Belongs to the cullin family. (894 aa)
	T265_06918	Uncharacterized protein. (732 aa)
	T265_07049	UBIQUITIN_CONJUGAT_2 domain-containing protein; Belongs to the ubiquitin-conjugating enzyme family. (158 aa)
	T265_04185	F-box domain protein. (384 aa)
	T265_07262	Cullin family protein; Belongs to the cullin family. (822 aa)
	T265_04148	Proteasome/cyclosome repeat protein. (2834 aa)
	T265_07477	Defective in cullin neddylation protein; Neddylation of cullins play an essential role in the regulation of SCF-type complexes activity. (273 aa)
	T265_04868	Uncharacterized protein. (1180 aa)
	T265_08061	Uncharacterized protein. (1267 aa)
	T265_06380	RDD domain-containing protein. (663 aa)
	T265_05375	UBIQUITIN_CONJUGAT_2 domain-containing protein; Belongs to the ubiquitin-conjugating enzyme family. (205 aa)
	T265_05477	Uncharacterized protein. (845 aa)
	T265_05717	RING-type domain-containing protein. (378 aa)
	T265_07211	LisH domain-containing protein. (1655 aa)
	T265_07333	Uncharacterized protein. (919 aa)
	T265_06070	TPR_REGION domain-containing protein. (758 aa)
	T265_09410	WD_REPEATS_REGION domain-containing protein. (678 aa)
	T265_06381	F-box domain-containing protein. (380 aa)
	T265_14054	Uncharacterized protein. (113 aa)
	T265_09695	BTB domain-containing protein. (648 aa)
	T265_10021	RBR-type E3 ubiquitin transferase. (530 aa)
	T265_06916	Uncharacterized protein. (1133 aa)
	T265_07328	Chromo domain-containing protein. (1185 aa)
	T265_10430	BACK domain-containing protein. (485 aa)
	T265_07350	Uncharacterized protein. (171 aa)
	T265_08865	Uncharacterized protein. (423 aa)
	T265_14360	Uncharacterized protein. (882 aa)
	T265_07935	Uncharacterized protein. (375 aa)
	T265_08001	Uncharacterized protein. (661 aa)
	T265_14562	RING-type domain-containing protein. (518 aa)
	T265_08451	Uncharacterized protein. (100 aa)
	T265_08481	Uncharacterized protein. (654 aa)
	T265_08544	WD_REPEATS_REGION domain-containing protein. (860 aa)
	T265_08903	Uncharacterized protein. (564 aa)
	T265_10137	UBIQUITIN_CONJUGAT_2 domain-containing protein; Belongs to the ubiquitin-conjugating enzyme family. (214 aa)
	T265_15867	Uncharacterized protein. (123 aa)
	T265_09389	CULLIN_2 domain-containing protein. (1718 aa)
	T265_10654	WD_REPEATS_REGION domain-containing protein. (623 aa)
	T265_09798	RING-type domain-containing protein. (1318 aa)
	T265_16265	Uncharacterized protein. (105 aa)
	T265_11222	RBR-type E3 ubiquitin transferase. (511 aa)
	T265_15418	Uncharacterized protein. (289 aa)
	T265_10294	WD_REPEATS_REGION domain-containing protein. (450 aa)
	T265_10568	E3 ubiquitin-protein ligase; Ubiquitin ligase protein which is a component of the N-end rule pathway. Recognizes and binds to proteins bearing specific N- terminal residues that are destabilizing according to the N-end rule, leading to their ubiquitination and subsequent degradation. (2344 aa)
	T265_15201	Uncharacterized protein. (214 aa)

Your Current Organism:

Opisthorchis viverrini

NCBI taxonomy Id: 6198
Other names: O. viverrini, Southeast Asian liver fluke

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
T265_00286	T265_06380	A0A075A672	A0A074ZKM4	Zinc finger, C3HC4 type.	RDD domain-containing protein.	0.517
T265_00286	T265_08865	A0A075A672	A0A074ZCA9	Zinc finger, C3HC4 type.	Uncharacterized protein.	0.434
T265_00286	T265_09002	A0A075A672	A0A075A6E6	Zinc finger, C3HC4 type.	Derlin; May be involved in the degradation of misfolded endoplasmic reticulum (ER) luminal proteins; Belongs to the derlin family.	0.907
T265_00286	T265_10644	A0A075A672	A0A074Z1G5	Zinc finger, C3HC4 type.	RING-type domain-containing protein.	0.900
T265_00286	T265_13254	A0A075A672	A0A075A3D0	Zinc finger, C3HC4 type.	E3 ubiquitin-protein ligase; Ubiquitin ligase protein which is a component of the N-end rule pathway. Recognizes and binds to proteins bearing specific N- terminal residues that are destabilizing according to the N-end rule, leading to their ubiquitination and subsequent degradation.	0.474
T265_00329	T265_07666	A0A075A3D5	A0A075AB14	ANK_REP_REGION domain-containing protein.	ANAPC4_WD40 domain-containing protein.	0.913
T265_00388	T265_00626	A0A075A6G6	A0A075A5D8	Uncharacterized protein.	Zf-rbx1 domain-containing protein.	0.725
T265_00388	T265_00723	A0A075A6G6	A0A075A537	Uncharacterized protein.	Uncharacterized protein.	0.654
T265_00388	T265_01323	A0A075A6G6	A0A074ZZY9	Uncharacterized protein.	CULLIN_2 domain-containing protein; Belongs to the cullin family.	0.638
T265_00388	T265_01440	A0A075A6G6	A0A074ZYM8	Uncharacterized protein.	RBR-type E3 ubiquitin transferase.	0.485
T265_00388	T265_01606	A0A075A6G6	A0A074ZY52	Uncharacterized protein.	RBR-type E3 ubiquitin transferase.	0.477
T265_00388	T265_01934	A0A075A6G6	A0A075A0S2	Uncharacterized protein.	CPSF_A domain-containing protein.	0.446
T265_00388	T265_02041	A0A075A6G6	A0A075A0P3	Uncharacterized protein.	Uncharacterized protein.	0.661
T265_00388	T265_03542	A0A075A6G6	A0A075A2Z7	Uncharacterized protein.	U-box domain-containing protein.	0.576
T265_00388	T265_04148	A0A075A6G6	A0A074ZP24	Uncharacterized protein.	Proteasome/cyclosome repeat protein.	0.635
T265_00388	T265_04298	A0A075A6G6	A0A074ZT46	Uncharacterized protein.	CULLIN_2 domain-containing protein; Belongs to the cullin family.	0.402
T265_00388	T265_04450	A0A075A6G6	A0A074ZSF7	Uncharacterized protein.	UBIQUITIN_CONJUGAT_2 domain-containing protein; Belongs to the ubiquitin-conjugating enzyme family.	0.490
T265_00388	T265_04792	A0A075A6G6	A0A074ZR88	Uncharacterized protein.	CULLIN_2 domain-containing protein; Belongs to the cullin family.	0.490
T265_00388	T265_04868	A0A075A6G6	A0A074ZMG0	Uncharacterized protein.	Uncharacterized protein.	0.562
T265_00388	T265_05368	A0A075A6G6	A0A074ZWD8	Uncharacterized protein.	Uncharacterized protein.	0.442