(7 nodes) Resolution of meiotic recombination intermediates network (Opisthorchis viverrini)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	T265_13216	Uncharacterized protein. (447 aa)
	T265_05790	ERCC4 domain-containing protein. (795 aa)
	T265_05396	RMI1_N domain-containing protein. (582 aa)
	T265_04345	ERCC4 domain-containing protein. (1022 aa)
	T265_07924	Uncharacterized protein. (368 aa)
	T265_06534	Uncharacterized protein. (1442 aa)
	T265_01582	Uncharacterized protein. (533 aa)

Your Current Organism:

Opisthorchis viverrini

NCBI taxonomy Id: 6198
Other names: O. viverrini, Southeast Asian liver fluke

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
T265_01582	T265_04345	A0A075A280	A0A075AGM6	Uncharacterized protein.	ERCC4 domain-containing protein.	0.846
T265_01582	T265_05396	A0A075A280	A0A075AFC4	Uncharacterized protein.	RMI1_N domain-containing protein.	0.799
T265_01582	T265_05790	A0A075A280	A0A075AEV1	Uncharacterized protein.	ERCC4 domain-containing protein.	0.779
T265_01582	T265_06534	A0A075A280	A0A074ZG74	Uncharacterized protein.	Uncharacterized protein.	0.999
T265_01582	T265_13216	A0A075A280	A0A075A3W8	Uncharacterized protein.	Uncharacterized protein.	0.509
T265_04345	T265_01582	A0A075AGM6	A0A075A280	ERCC4 domain-containing protein.	Uncharacterized protein.	0.846
T265_04345	T265_05396	A0A075AGM6	A0A075AFC4	ERCC4 domain-containing protein.	RMI1_N domain-containing protein.	0.870
T265_04345	T265_05790	A0A075AGM6	A0A075AEV1	ERCC4 domain-containing protein.	ERCC4 domain-containing protein.	0.941
T265_04345	T265_06534	A0A075AGM6	A0A074ZG74	ERCC4 domain-containing protein.	Uncharacterized protein.	0.780
T265_04345	T265_07924	A0A075AGM6	A0A074ZAS8	ERCC4 domain-containing protein.	Uncharacterized protein.	0.775
T265_05396	T265_01582	A0A075AFC4	A0A075A280	RMI1_N domain-containing protein.	Uncharacterized protein.	0.799
T265_05396	T265_04345	A0A075AFC4	A0A075AGM6	RMI1_N domain-containing protein.	ERCC4 domain-containing protein.	0.870
T265_05396	T265_05790	A0A075AFC4	A0A075AEV1	RMI1_N domain-containing protein.	ERCC4 domain-containing protein.	0.928
T265_05396	T265_06534	A0A075AFC4	A0A074ZG74	RMI1_N domain-containing protein.	Uncharacterized protein.	0.998
T265_05396	T265_07924	A0A075AFC4	A0A074ZAS8	RMI1_N domain-containing protein.	Uncharacterized protein.	0.609
T265_05790	T265_01582	A0A075AEV1	A0A075A280	ERCC4 domain-containing protein.	Uncharacterized protein.	0.779
T265_05790	T265_04345	A0A075AEV1	A0A075AGM6	ERCC4 domain-containing protein.	ERCC4 domain-containing protein.	0.941
T265_05790	T265_05396	A0A075AEV1	A0A075AFC4	ERCC4 domain-containing protein.	RMI1_N domain-containing protein.	0.928
T265_05790	T265_06534	A0A075AEV1	A0A074ZG74	ERCC4 domain-containing protein.	Uncharacterized protein.	0.999
T265_05790	T265_07924	A0A075AEV1	A0A074ZAS8	ERCC4 domain-containing protein.	Uncharacterized protein.	0.989