10 items (Opisthorchis viverrini) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	T265_15640	Uncharacterized protein. (63 aa)
	T265_15232	Uncharacterized protein. (739 aa)
	T265_10496	Tyrosine-protein kinase. (1085 aa)
	T265_09745	SH2 domain-containing protein. (1080 aa)
	T265_06464	Uncharacterized protein. (860 aa)
	T265_05581	Uncharacterized protein. (1713 aa)
	T265_06196	Uncharacterized protein. (1567 aa)
	T265_13452	Uncharacterized protein. (434 aa)
	T265_13011	Uncharacterized protein. (652 aa)
	T265_08093	Tyrosine-protein kinase. (1239 aa)

Your Current Organism:

Opisthorchis viverrini

NCBI taxonomy Id: 6198
Other names: O. viverrini, Southeast Asian liver fluke

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

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MFA: multi-fasta format - containing the aminoacid sequences in the network

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
T265_05581	T265_13011	A0A074ZJX2	A0A074ZZ51	Uncharacterized protein.	Uncharacterized protein.	0.693
T265_05581	T265_13452	A0A074ZJX2	A0A074ZTG2	Uncharacterized protein.	Uncharacterized protein.	0.504
T265_06196	T265_06464	A0A074ZL87	A0A074ZGD6	Uncharacterized protein.	Uncharacterized protein.	0.620
T265_06196	T265_10496	A0A074ZL87	A0A074Z283	Uncharacterized protein.	Tyrosine-protein kinase.	0.482
T265_06196	T265_13011	A0A074ZL87	A0A074ZZ51	Uncharacterized protein.	Uncharacterized protein.	0.822
T265_06196	T265_13452	A0A074ZL87	A0A074ZTG2	Uncharacterized protein.	Uncharacterized protein.	0.727
T265_06464	T265_06196	A0A074ZGD6	A0A074ZL87	Uncharacterized protein.	Uncharacterized protein.	0.620
T265_06464	T265_10496	A0A074ZGD6	A0A074Z283	Uncharacterized protein.	Tyrosine-protein kinase.	0.701
T265_06464	T265_13011	A0A074ZGD6	A0A074ZZ51	Uncharacterized protein.	Uncharacterized protein.	0.722
T265_06464	T265_13452	A0A074ZGD6	A0A074ZTG2	Uncharacterized protein.	Uncharacterized protein.	0.976
T265_06464	T265_15640	A0A074ZGD6	A0A074YWY8	Uncharacterized protein.	Uncharacterized protein.	0.620
T265_08093	T265_13011	A0A075A9M4	A0A074ZZ51	Tyrosine-protein kinase.	Uncharacterized protein.	0.693
T265_08093	T265_13452	A0A075A9M4	A0A074ZTG2	Tyrosine-protein kinase.	Uncharacterized protein.	0.504
T265_10496	T265_06196	A0A074Z283	A0A074ZL87	Tyrosine-protein kinase.	Uncharacterized protein.	0.482
T265_10496	T265_06464	A0A074Z283	A0A074ZGD6	Tyrosine-protein kinase.	Uncharacterized protein.	0.701
T265_10496	T265_13011	A0A074Z283	A0A074ZZ51	Tyrosine-protein kinase.	Uncharacterized protein.	0.887
T265_10496	T265_13452	A0A074Z283	A0A074ZTG2	Tyrosine-protein kinase.	Uncharacterized protein.	0.543
T265_10496	T265_15640	A0A074Z283	A0A074YWY8	Tyrosine-protein kinase.	Uncharacterized protein.	0.482
T265_13011	T265_05581	A0A074ZZ51	A0A074ZJX2	Uncharacterized protein.	Uncharacterized protein.	0.693
T265_13011	T265_06196	A0A074ZZ51	A0A074ZL87	Uncharacterized protein.	Uncharacterized protein.	0.822