21 items (Opisthorchis viverrini) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	T265_10860	FZ domain-containing protein; Belongs to the G-protein coupled receptor Fz/Smo family. (1980 aa)
	T265_02614	Uncharacterized protein. (2130 aa)
	T265_08495	SET domain-containing protein. (416 aa)
	T265_01015	WD_REPEATS_REGION domain-containing protein. (345 aa)
	T265_06594	Uncharacterized protein. (818 aa)
	T265_04979	Uncharacterized protein. (359 aa)
	T265_11076	Uncharacterized protein. (1263 aa)
	T265_16012	Uncharacterized protein. (106 aa)
	T265_08330	Uncharacterized protein. (440 aa)
	T265_08332	Uncharacterized protein. (813 aa)
	T265_15709	Ig-like domain-containing protein. (359 aa)
	T265_08012	Uncharacterized protein. (153 aa)
	T265_14303	Uncharacterized protein. (2198 aa)
	T265_14342	Uncharacterized protein. (831 aa)
	T265_13650	Uncharacterized protein. (299 aa)
	T265_14381	Uncharacterized protein. (1442 aa)
	T265_04591	Zinc finger, C2H2 type. (373 aa)
	T265_06590	Uncharacterized protein. (319 aa)
	T265_06595	Uncharacterized protein. (940 aa)
	T265_02819	Uncharacterized protein. (682 aa)
	T265_01795	Lebercilin domain-containing protein. (772 aa)

Your Current Organism:

Opisthorchis viverrini

NCBI taxonomy Id: 6198
Other names: O. viverrini, Southeast Asian liver fluke

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

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MFA: multi-fasta format - containing the aminoacid sequences in the network

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
T265_01795	T265_02819	A0A074ZY49	A0A074ZUI5	Lebercilin domain-containing protein.	Uncharacterized protein.	0.504
T265_02614	T265_14381	A0A075A600	A0A074ZMJ9	Uncharacterized protein.	Uncharacterized protein.	0.532
T265_02819	T265_01795	A0A074ZUI5	A0A074ZY49	Uncharacterized protein.	Lebercilin domain-containing protein.	0.504
T265_02819	T265_14342	A0A074ZUI5	A0A074ZGH2	Uncharacterized protein.	Uncharacterized protein.	0.407
T265_14303	T265_14381	A0A074ZCE9	A0A074ZMJ9	Uncharacterized protein.	Uncharacterized protein.	0.532
T265_14303	T265_16012	A0A074ZCE9	A0A074Z5B3	Uncharacterized protein.	Uncharacterized protein.	0.605
T265_14342	T265_02819	A0A074ZGH2	A0A074ZUI5	Uncharacterized protein.	Uncharacterized protein.	0.407
T265_14381	T265_02614	A0A074ZMJ9	A0A075A600	Uncharacterized protein.	Uncharacterized protein.	0.532
T265_14381	T265_14303	A0A074ZMJ9	A0A074ZCE9	Uncharacterized protein.	Uncharacterized protein.	0.532
T265_14381	T265_16012	A0A074ZMJ9	A0A074Z5B3	Uncharacterized protein.	Uncharacterized protein.	0.532
T265_16012	T265_14303	A0A074Z5B3	A0A074ZCE9	Uncharacterized protein.	Uncharacterized protein.	0.605
T265_16012	T265_14381	A0A074Z5B3	A0A074ZMJ9	Uncharacterized protein.	Uncharacterized protein.	0.532