12 items (Opisthorchis viverrini) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	T265_06998	Uncharacterized protein. (1007 aa)
	T265_14875	Ion_trans domain-containing protein. (188 aa)
	T265_06995	Uncharacterized protein. (313 aa)
	T265_11481	Cyclic nucleotide-binding domain-containing protein. (901 aa)
	T265_12799	Ion_trans domain-containing protein. (103 aa)
	T265_01461	Ion_trans_N domain-containing protein. (290 aa)
	T265_14358	Uncharacterized protein. (148 aa)
	T265_09531	Ion_trans_N domain-containing protein. (196 aa)
	T265_15008	FHA domain-containing protein. (796 aa)
	T265_15901	Uncharacterized protein. (105 aa)
	T265_01460	Cyclic nucleotide-binding domain-containing protein. (425 aa)
	T265_09530	Cyclic nucleotide-binding domain-containing protein. (301 aa)

Your Current Organism:

Opisthorchis viverrini

NCBI taxonomy Id: 6198
Other names: O. viverrini, Southeast Asian liver fluke

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structured XML interaction data, according to the 'PSI-MI' data standard

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a flat-file format describing the coordinates and colors of nodes in the network

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
T265_01460	T265_12799	A0A075A9H8	A0A074ZZ97	Cyclic nucleotide-binding domain-containing protein.	Ion_trans domain-containing protein.	0.733
T265_01460	T265_14875	A0A075A9H8	A0A074ZGI1	Cyclic nucleotide-binding domain-containing protein.	Ion_trans domain-containing protein.	0.897
T265_09530	T265_12799	A0A075A4L9	A0A074ZZ97	Cyclic nucleotide-binding domain-containing protein.	Ion_trans domain-containing protein.	0.704
T265_09530	T265_14875	A0A075A4L9	A0A074ZGI1	Cyclic nucleotide-binding domain-containing protein.	Ion_trans domain-containing protein.	0.899
T265_12799	T265_01460	A0A074ZZ97	A0A075A9H8	Ion_trans domain-containing protein.	Cyclic nucleotide-binding domain-containing protein.	0.733
T265_12799	T265_09530	A0A074ZZ97	A0A075A4L9	Ion_trans domain-containing protein.	Cyclic nucleotide-binding domain-containing protein.	0.704
T265_14875	T265_01460	A0A074ZGI1	A0A075A9H8	Ion_trans domain-containing protein.	Cyclic nucleotide-binding domain-containing protein.	0.897
T265_14875	T265_09530	A0A074ZGI1	A0A075A4L9	Ion_trans domain-containing protein.	Cyclic nucleotide-binding domain-containing protein.	0.899