25 items (Opisthorchis viverrini) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	T265_09530	Cyclic nucleotide-binding domain-containing protein. (301 aa)
	T265_01461	Ion_trans_N domain-containing protein. (290 aa)
	T265_12799	Ion_trans domain-containing protein. (103 aa)
	T265_03985	Uncharacterized protein. (766 aa)
	T265_11481	Cyclic nucleotide-binding domain-containing protein. (901 aa)
	T265_05537	Uncharacterized protein. (119 aa)
	T265_14875	Ion_trans domain-containing protein. (188 aa)
	T265_06998	Uncharacterized protein. (1007 aa)
	T265_07474	Ion_trans domain-containing protein. (392 aa)
	T265_07917	Uncharacterized protein. (223 aa)
	T265_07823	PKD_channel domain-containing protein. (836 aa)
	T265_14735	Uncharacterized protein. (2826 aa)
	T265_09531	Ion_trans_N domain-containing protein. (196 aa)
	T265_15841	Uncharacterized protein. (235 aa)
	T265_13373	Cyclic nucleotide-binding domain-containing protein. (328 aa)
	T265_03984	Ion_trans domain-containing protein. (325 aa)
	T265_04939	Ion_trans domain-containing protein. (778 aa)
	T265_13800	Uncharacterized protein. (599 aa)
	T265_05536	Uncharacterized protein. (659 aa)
	T265_03361	Uncharacterized protein. (2142 aa)
	T265_14336	ANK_REP_REGION domain-containing protein. (1731 aa)
	T265_01460	Cyclic nucleotide-binding domain-containing protein. (425 aa)
	T265_12995	Uncharacterized protein. (206 aa)
	T265_09254	Uncharacterized protein. (5727 aa)
	T265_00638	Cyclic nucleotide-binding domain-containing protein. (620 aa)

Your Current Organism:

Opisthorchis viverrini

NCBI taxonomy Id: 6198
Other names: O. viverrini, Southeast Asian liver fluke

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
T265_00638	T265_05536	A0A075A5F2	A0A074ZNR3	Cyclic nucleotide-binding domain-containing protein.	Uncharacterized protein.	0.786
T265_00638	T265_05537	A0A075A5F2	A0A074ZJC1	Cyclic nucleotide-binding domain-containing protein.	Uncharacterized protein.	0.786
T265_00638	T265_13800	A0A075A5F2	A0A074ZK54	Cyclic nucleotide-binding domain-containing protein.	Uncharacterized protein.	0.786
T265_01460	T265_12799	A0A075A9H8	A0A074ZZ97	Cyclic nucleotide-binding domain-containing protein.	Ion_trans domain-containing protein.	0.733
T265_01460	T265_14875	A0A075A9H8	A0A074ZGI1	Cyclic nucleotide-binding domain-containing protein.	Ion_trans domain-containing protein.	0.897
T265_03361	T265_07823	A0A075AHN8	A0A074ZB83	Uncharacterized protein.	PKD_channel domain-containing protein.	0.536
T265_03361	T265_07917	A0A075AHN8	A0A074ZBA1	Uncharacterized protein.	Uncharacterized protein.	0.536
T265_03361	T265_12995	A0A075AHN8	A0A075A6Q6	Uncharacterized protein.	Uncharacterized protein.	0.536
T265_03361	T265_14735	A0A075AHN8	A0A074Z731	Uncharacterized protein.	Uncharacterized protein.	0.455
T265_03984	T265_05536	A0A074ZQK5	A0A074ZNR3	Ion_trans domain-containing protein.	Uncharacterized protein.	0.633
T265_03984	T265_05537	A0A074ZQK5	A0A074ZJC1	Ion_trans domain-containing protein.	Uncharacterized protein.	0.633
T265_03984	T265_13373	A0A074ZQK5	A0A074ZPR9	Ion_trans domain-containing protein.	Cyclic nucleotide-binding domain-containing protein.	0.900
T265_03984	T265_13800	A0A074ZQK5	A0A074ZK54	Ion_trans domain-containing protein.	Uncharacterized protein.	0.633
T265_03985	T265_05536	A0A074ZU94	A0A074ZNR3	Uncharacterized protein.	Uncharacterized protein.	0.633
T265_03985	T265_05537	A0A074ZU94	A0A074ZJC1	Uncharacterized protein.	Uncharacterized protein.	0.633
T265_03985	T265_13373	A0A074ZU94	A0A074ZPR9	Uncharacterized protein.	Cyclic nucleotide-binding domain-containing protein.	0.498
T265_03985	T265_13800	A0A074ZU94	A0A074ZK54	Uncharacterized protein.	Uncharacterized protein.	0.633
T265_05536	T265_00638	A0A074ZNR3	A0A075A5F2	Uncharacterized protein.	Cyclic nucleotide-binding domain-containing protein.	0.786
T265_05536	T265_03984	A0A074ZNR3	A0A074ZQK5	Uncharacterized protein.	Ion_trans domain-containing protein.	0.633
T265_05536	T265_03985	A0A074ZNR3	A0A074ZU94	Uncharacterized protein.	Uncharacterized protein.	0.633