10 items (Opisthorchis viverrini) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	T265_10878	Uncharacterized protein. (423 aa)
	T265_13632	Uncharacterized protein. (684 aa)
	T265_04079	Uncharacterized protein. (968 aa)
	T265_08460	Uncharacterized protein. (128 aa)
	T265_08873	Uncharacterized protein. (595 aa)
	T265_00034	Uncharacterized protein. (417 aa)
	T265_03936	Uncharacterized protein. (273 aa)
	T265_14872	Uncharacterized protein. (491 aa)
	T265_06678	Metal cation transporter, ZIP family. (412 aa)
	T265_02209	Uncharacterized protein. (646 aa)

Your Current Organism:

Opisthorchis viverrini

NCBI taxonomy Id: 6198
Other names: O. viverrini, Southeast Asian liver fluke

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
T265_00034	T265_03936	A0A075AJX9	A0A075A1N5	Uncharacterized protein.	Uncharacterized protein.	0.510
T265_00034	T265_04079	A0A075AJX9	A0A074ZQ77	Uncharacterized protein.	Uncharacterized protein.	0.455
T265_02209	T265_03936	A0A074ZWS0	A0A075A1N5	Uncharacterized protein.	Uncharacterized protein.	0.590
T265_02209	T265_04079	A0A074ZWS0	A0A074ZQ77	Uncharacterized protein.	Uncharacterized protein.	0.626
T265_02209	T265_06678	A0A074ZWS0	A0A074ZRK9	Uncharacterized protein.	Metal cation transporter, ZIP family.	0.621
T265_02209	T265_08460	A0A074ZWS0	A0A074ZK25	Uncharacterized protein.	Uncharacterized protein.	0.408
T265_02209	T265_08873	A0A074ZWS0	A0A074Z7X1	Uncharacterized protein.	Uncharacterized protein.	0.408
T265_02209	T265_10878	A0A074ZWS0	A0A074ZZN6	Uncharacterized protein.	Uncharacterized protein.	0.672
T265_02209	T265_13632	A0A074ZWS0	A0A074ZLG5	Uncharacterized protein.	Uncharacterized protein.	0.408
T265_02209	T265_14872	A0A074ZWS0	A0A074Z5G3	Uncharacterized protein.	Uncharacterized protein.	0.559
T265_03936	T265_00034	A0A075A1N5	A0A075AJX9	Uncharacterized protein.	Uncharacterized protein.	0.510
T265_03936	T265_02209	A0A075A1N5	A0A074ZWS0	Uncharacterized protein.	Uncharacterized protein.	0.590
T265_03936	T265_04079	A0A075A1N5	A0A074ZQ77	Uncharacterized protein.	Uncharacterized protein.	0.667
T265_03936	T265_08460	A0A075A1N5	A0A074ZK25	Uncharacterized protein.	Uncharacterized protein.	0.466
T265_03936	T265_10878	A0A075A1N5	A0A074ZZN6	Uncharacterized protein.	Uncharacterized protein.	0.601
T265_04079	T265_00034	A0A074ZQ77	A0A075AJX9	Uncharacterized protein.	Uncharacterized protein.	0.455
T265_04079	T265_02209	A0A074ZQ77	A0A074ZWS0	Uncharacterized protein.	Uncharacterized protein.	0.626
T265_04079	T265_03936	A0A074ZQ77	A0A075A1N5	Uncharacterized protein.	Uncharacterized protein.	0.667
T265_04079	T265_06678	A0A074ZQ77	A0A074ZRK9	Uncharacterized protein.	Metal cation transporter, ZIP family.	0.717
T265_04079	T265_08460	A0A074ZQ77	A0A074ZK25	Uncharacterized protein.	Uncharacterized protein.	0.406