16 items (Opisthorchis viverrini) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	T265_01109	Uncharacterized protein. (181 aa)
	T265_13996	ABC transmembrane type-1 domain-containing protein. (480 aa)
	T265_01672	Uncharacterized protein. (215 aa)
	T265_10058	Uncharacterized protein. (533 aa)
	T265_01107	Uncharacterized protein. (136 aa)
	T265_11150	Uncharacterized protein. (419 aa)
	T265_13554	Uncharacterized protein. (100 aa)
	T265_05333	Ras family protein. (227 aa)
	T265_13754	Uncharacterized protein. (167 aa)
	T265_06068	Uncharacterized protein. (475 aa)
	T265_09946	Uncharacterized protein. (244 aa)
	T265_14358	Uncharacterized protein. (148 aa)
	T265_09383	Uncharacterized protein. (268 aa)
	T265_10615	Uncharacterized protein. (227 aa)
	T265_00344	Integrase catalytic domain-containing protein. (382 aa)
	T265_09618	Uncharacterized protein. (413 aa)

Your Current Organism:

Opisthorchis viverrini

NCBI taxonomy Id: 6198
Other names: O. viverrini, Southeast Asian liver fluke

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
T265_00344	T265_01107	A0A075AJS7	A0A074ZZD2	Integrase catalytic domain-containing protein.	Uncharacterized protein.	0.914
T265_00344	T265_01109	A0A075AJS7	A0A075AJ58	Integrase catalytic domain-containing protein.	Uncharacterized protein.	0.914
T265_00344	T265_01672	A0A075AJS7	A0A075A946	Integrase catalytic domain-containing protein.	Uncharacterized protein.	0.558
T265_00344	T265_09383	A0A075AJS7	A0A074Z649	Integrase catalytic domain-containing protein.	Uncharacterized protein.	0.911
T265_00344	T265_09618	A0A075AJS7	A0A074Z567	Integrase catalytic domain-containing protein.	Uncharacterized protein.	0.993
T265_00344	T265_09946	A0A075AJS7	A0A074ZF02	Integrase catalytic domain-containing protein.	Uncharacterized protein.	0.999
T265_00344	T265_10058	A0A075AJS7	A0A075A2T4	Integrase catalytic domain-containing protein.	Uncharacterized protein.	0.915
T265_00344	T265_10615	A0A075AJS7	A0A074Z5Y2	Integrase catalytic domain-containing protein.	Uncharacterized protein.	0.995
T265_00344	T265_11150	A0A075AJS7	A0A074ZYK7	Integrase catalytic domain-containing protein.	Uncharacterized protein.	0.936
T265_01107	T265_00344	A0A074ZZD2	A0A075AJS7	Uncharacterized protein.	Integrase catalytic domain-containing protein.	0.914
T265_01107	T265_01109	A0A074ZZD2	A0A075AJ58	Uncharacterized protein.	Uncharacterized protein.	0.929
T265_01107	T265_09383	A0A074ZZD2	A0A074Z649	Uncharacterized protein.	Uncharacterized protein.	0.972
T265_01107	T265_09618	A0A074ZZD2	A0A074Z567	Uncharacterized protein.	Uncharacterized protein.	0.945
T265_01107	T265_09946	A0A074ZZD2	A0A074ZF02	Uncharacterized protein.	Uncharacterized protein.	0.918
T265_01107	T265_10058	A0A074ZZD2	A0A075A2T4	Uncharacterized protein.	Uncharacterized protein.	0.699
T265_01107	T265_10615	A0A074ZZD2	A0A074Z5Y2	Uncharacterized protein.	Uncharacterized protein.	0.869
T265_01107	T265_11150	A0A074ZZD2	A0A074ZYK7	Uncharacterized protein.	Uncharacterized protein.	0.742
T265_01109	T265_00344	A0A075AJ58	A0A075AJS7	Uncharacterized protein.	Integrase catalytic domain-containing protein.	0.914
T265_01109	T265_01107	A0A075AJ58	A0A074ZZD2	Uncharacterized protein.	Uncharacterized protein.	0.929
T265_01109	T265_09383	A0A075AJ58	A0A074Z649	Uncharacterized protein.	Uncharacterized protein.	0.972