20 items (Opisthorchis viverrini) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	T265_16116	Uncharacterized protein. (150 aa)
	T265_16174	Uncharacterized protein. (41 aa)
	T265_15950	DHC_N2 domain-containing protein. (195 aa)
	T265_15906	Uncharacterized protein. (134 aa)
	T265_12226	MT domain-containing protein. (237 aa)
	T265_12065	Uncharacterized protein. (1047 aa)
	T265_08730	Uncharacterized protein. (3561 aa)
	T265_08736	Uncharacterized protein. (907 aa)
	T265_06797	Uncharacterized protein. (3742 aa)
	T265_04421	Uncharacterized protein. (4291 aa)
	T265_12224	Dynein_AAA_lid domain-containing protein. (127 aa)
	T265_01537	Uncharacterized protein. (4359 aa)
	T265_02480	Uncharacterized protein. (3959 aa)
	T265_10312	Uncharacterized protein; Belongs to the NDK family. (801 aa)
	T265_12527	WD_REPEATS_REGION domain-containing protein. (695 aa)
	T265_02270	Uncharacterized protein. (231 aa)
	T265_07583	Reverse transcriptase domain-containing protein. (1295 aa)
	T265_03187	WD_REPEATS_REGION domain-containing protein. (567 aa)
	T265_02269	Uncharacterized protein. (570 aa)
	T265_00243	WD_REPEATS_REGION domain-containing protein. (992 aa)

Your Current Organism:

Opisthorchis viverrini

NCBI taxonomy Id: 6198
Other names: O. viverrini, Southeast Asian liver fluke

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structured XML interaction data, according to the 'PSI-MI' data standard

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a flat-file format describing the coordinates and colors of nodes in the network

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
T265_00243	T265_01537	A0A075AJV9	A0A074ZXY5	WD_REPEATS_REGION domain-containing protein.	Uncharacterized protein.	0.478
T265_00243	T265_07583	A0A075AJV9	A0A075AB62	WD_REPEATS_REGION domain-containing protein.	Reverse transcriptase domain-containing protein.	0.532
T265_00243	T265_10312	A0A075AJV9	A0A075A1Q6	WD_REPEATS_REGION domain-containing protein.	Uncharacterized protein; Belongs to the NDK family.	0.559
T265_01537	T265_00243	A0A074ZXY5	A0A075AJV9	Uncharacterized protein.	WD_REPEATS_REGION domain-containing protein.	0.478
T265_01537	T265_02269	A0A074ZXY5	A0A075AIE6	Uncharacterized protein.	Uncharacterized protein.	0.436
T265_01537	T265_02270	A0A074ZXY5	A0A075A757	Uncharacterized protein.	Uncharacterized protein.	0.436
T265_01537	T265_12527	A0A074ZXY5	A0A075A3K8	Uncharacterized protein.	WD_REPEATS_REGION domain-containing protein.	0.436
T265_02269	T265_01537	A0A075AIE6	A0A074ZXY5	Uncharacterized protein.	Uncharacterized protein.	0.436
T265_02269	T265_02270	A0A075AIE6	A0A075A757	Uncharacterized protein.	Uncharacterized protein.	0.538
T265_02269	T265_02480	A0A075AIE6	A0A074ZZ71	Uncharacterized protein.	Uncharacterized protein.	0.436
T265_02269	T265_03187	A0A075AIE6	A0A075AHR5	Uncharacterized protein.	WD_REPEATS_REGION domain-containing protein.	0.520
T265_02269	T265_04421	A0A075AIE6	A0A074ZNX3	Uncharacterized protein.	Uncharacterized protein.	0.436
T265_02269	T265_06797	A0A075AIE6	A0A074ZF62	Uncharacterized protein.	Uncharacterized protein.	0.436
T265_02269	T265_08730	A0A075AIE6	A0A074Z870	Uncharacterized protein.	Uncharacterized protein.	0.436
T265_02269	T265_10312	A0A075AIE6	A0A075A1Q6	Uncharacterized protein.	Uncharacterized protein; Belongs to the NDK family.	0.605
T265_02269	T265_12065	A0A075AIE6	A0A074Z6X9	Uncharacterized protein.	Uncharacterized protein.	0.530
T265_02269	T265_12224	A0A075AIE6	A0A074ZTM6	Uncharacterized protein.	Dynein_AAA_lid domain-containing protein.	0.436
T265_02269	T265_12226	A0A075AIE6	A0A074YZD7	Uncharacterized protein.	MT domain-containing protein.	0.436
T265_02269	T265_15906	A0A075AIE6	A0A074YVI7	Uncharacterized protein.	Uncharacterized protein.	0.436
T265_02269	T265_15950	A0A075AIE6	A0A074YV86	Uncharacterized protein.	DHC_N2 domain-containing protein.	0.436